Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0585 |
Symbol | |
ID | 5609968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 713851 |
End bp | 714966 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931430 |
Product | ABC-2 type transporter |
Protein accession | YP_001472325 |
Protein GI | 157373725 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000556211 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTTTAG CTAACAGCCT GCTTAACAGT TTGCGAAGAA TAAAGGCCAT TACGACCAAA GAGATTAGAC AACTGATGAG AGACAGGATC ACCTTCGGTA TGGTGGTGAT GATCCCTCTC ATTCAACTGC TTCTCTTTGG CTATGCGATC AACACAGATG TCAGAAATGT GCCTGTCGCG ATCGTCGATC AGAGTAACTC GGCGCTCGGA CGTTGGATAG TCGAGGCCAT TAAGGTCACA CAGGTTGTCT CCATAGAGAG CCATTATACA ACCGCCAGAG AAGCGGAAGA TGCCATTACC CGCGGAGAGA TACGTGCCGC CCTCATTCTT CCACCAAACC TGACCGAGAA GTTAGCCAAT AAGGAGACCT TAGGCCAATG GCTGGTCGAT GGCTCAGATA CCATGATCGC CGGTGCGATT AAACAGCTGC GCCATATGCC ACTGGATCAG ATAACGGGCA TAAAAACAGA GGTCCCGCCG ACATTCGAGG TCGCCCTCTT CTACAATCCC GAGCAACGCT CTGCCGTCAA TATTGTACCG GGATTGATCG CGGTGATCTT GACCATGACC ATGATTCTGT TCACCTCGGC GGCCATCGTC AGAGAGCGAG AGAGAGGAAA CCTGGAGCTA TTGATCACTA CCCCTATCAA GCCATTAGAG CTAATGCTGG GCAAGATATT TCCCTATATC ATTGTCGGCC TTATTCAGAT GACGATCATT CTGGGACTGG GTAATATCAT CTTCGATGTC CCCCTCAATG GCGATATCGC TCAACTGCTT ATGGGCACCC TGCTGTTTAT CGCCGCAAGC CTCACCTTAG GCCTTATCAT CTCGACCATA GCCAAGTCAC AACTTCAGGC GATGCAGATG ACCATCTTCA TCATACTGCC AACCATACTC CTATCGGGCT TTATGTTCCC CTTCGAGGCC ATGCCCAAAC CGGCTCAATG GATCGCCGAA ATACTGCCCG CGACCCACTT TATGCGGATC ATCCGCGCCG TAGTGCTTAG AGGAGGCGAG ATAAGTGATA TGCGCTTCGA TGCGCTCTGG CTTGTCGGTT TCACGGTTAT AGGCATCATC ATCGCCTCGA TGAGGTTCAA TAAACGCCTC GATTAA
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Protein sequence | MFLANSLLNS LRRIKAITTK EIRQLMRDRI TFGMVVMIPL IQLLLFGYAI NTDVRNVPVA IVDQSNSALG RWIVEAIKVT QVVSIESHYT TAREAEDAIT RGEIRAALIL PPNLTEKLAN KETLGQWLVD GSDTMIAGAI KQLRHMPLDQ ITGIKTEVPP TFEVALFYNP EQRSAVNIVP GLIAVILTMT MILFTSAAIV RERERGNLEL LITTPIKPLE LMLGKIFPYI IVGLIQMTII LGLGNIIFDV PLNGDIAQLL MGTLLFIAAS LTLGLIISTI AKSQLQAMQM TIFIILPTIL LSGFMFPFEA MPKPAQWIAE ILPATHFMRI IRAVVLRGGE ISDMRFDALW LVGFTVIGII IASMRFNKRL D
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