| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0573 |
|---|
| Symbol | |
|---|
| ID | 5609612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 699606 |
|---|
| End bp | 700106 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640931418 |
|---|
| Product | MshA, mannose-sensitive haemaglutinin |
|---|
| Protein accession | YP_001472313 |
|---|
| Protein GI | 157373713 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.200044 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGGC ATTCGGGTTT TACACTCATA GAGCTCGTGG TGGTTATTAT CATCCTGGGC
ATACTGGCTG TAACTGCGGC GCCTAAGTTC ATTAACTTAC AAAATGATGC GCGTATCTCG
ACGGTGCAGG GGATGAAGGC CGCGGTGGCC TCCGAAGTGC TTCTGGTCCA TTCCAAGGCA
TTGATACAAG GGTTAGAGAA AGACAGTGAA GTCGATGTCG ATCTGGGCAG TGTGACAGTA
AAAAGCGTGT ATGGTTACCC TAAGGCCGAA TTTAGTTCGA CCTGGTCAAA ACTGCTCGGT
GGTGAGTTTG GTGAAGCCGG CTACGTCGAT CCCGCCGAAT ATGACTGGAT CTGGCGCAAT
CGCACCGGCG GCAGCAACAT AGGCCTCTAT TTTATGCCCA GAGGCTACTC CGACGATAAT
CAAAATTGTT GGGTAAGGTA TCAGCAGCCG ACAGAAGCCG GTGGCGAATA CCAGTTAACC
ATAGAGACCA GCGGCTGTTA G
|
|---|
| Protein sequence | MNRHSGFTLI ELVVVIIILG ILAVTAAPKF INLQNDARIS TVQGMKAAVA SEVLLVHSKA
LIQGLEKDSE VDVDLGSVTV KSVYGYPKAE FSSTWSKLLG GEFGEAGYVD PAEYDWIWRN
RTGGSNIGLY FMPRGYSDDN QNCWVRYQQP TEAGGEYQLT IETSGC
|
|---|
| |