Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0569 |
Symbol | |
ID | 5609815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 693249 |
End bp | 694397 |
Gene Length | 1149 bp |
Protein Length | 382 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640931414 |
Product | ABC-2 type transporter |
Protein accession | YP_001472309 |
Protein GI | 157373709 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.101548 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTTTTT GGCAATTTCT ATTGGCAGAC TTGCGCGCGA TTGTAATGGA TAAGGCGATC GCCATTACCC TGTTTGGCGG TGTGCTGTTT TATTCTGTGC TCTATCCGCT GCCCTATTTG AATCAGGTGC CGACCGAGCA GATGTTGGTG GTTATCGACC ATGATGGTTC ATCTTTGAGC CGCCGCTTGA TCAGACACGC CGATGCCAGC CCTAAAATTA CCGTGACCGG CCAGGTAAGC ACTATCGAAA CGGCTCAAAG CTGGATCGAA TCCGGCAGGG CCAATGGCTT ACTGGTTATC CCCCATGGTT TCAGGAAAGA TCTGATGCTG GGGCGAGGGT CAACCTTAAG CTATGGCGGC GATGCCAACT ATTTTTTAAT CTATTCCGCC GTGGTAGAAG GCCTGGTTTC TGTGGGGCTG GACGCGAGCA AGTATGTGCA GCTCGTGGGT CTGCTAGCCC ATGGTGAGAA CGCTAAGGCC GCAGAGCGAA GCCTGAATGC GGTGAAGCTC AATAGTGTGC CCGCCTTCAA TCCGAGTCTG GGATACACCC CCTATGTGGT ACCCGGGGTA CTGCTACTGG TACTACACCA AACCCTATTA ATCGGAACCG GCATCTTGGG CGCCGGACAG TGGCGAAACC AAGGCTATTG GCGCAGGGTT TCCCCCCTGA TGCTGATTAG CGGACGTATC TGTGTGTTCT TCCTCATCTA TACCCTGTTC ACCAGTCTGT ATGTGGGGCA TTGCTATTAC TGGTACGGGG TCAGCGTACA GGCAACGCTG GGGCAGGTCG CGCTATTTCT GCTGCCATTT CTGCTATCGA CCGCGGTTAC CGGTATCGCG TTTAGTTGTC TGTTCACCCG TCGGGATCTG CCGACTCAGG TATTGCTGCT GATCTCTATG CCGATCCTCT TCGTATCCGG ATTTGTGTGG CCGTTGGAGT TGATCCCGGA GCCTCTTATC TGGATCTCCA CCATTATCCC GGCGGTACCG GCGATTATCG GAATGTTACA GCTCAATCAG ATGGGGGCTT CATGGGTCAG TATCATGCCC CTATGGCTTC ACCTGTGGGG TCTGTTTGCA CTCTTCTTCA TGCTGGCCCT CTATGGGGTT AATTGGCGGT TGAAGCGAGA GCCGAACTGC GAGTCATAA
|
Protein sequence | MTFWQFLLAD LRAIVMDKAI AITLFGGVLF YSVLYPLPYL NQVPTEQMLV VIDHDGSSLS RRLIRHADAS PKITVTGQVS TIETAQSWIE SGRANGLLVI PHGFRKDLML GRGSTLSYGG DANYFLIYSA VVEGLVSVGL DASKYVQLVG LLAHGENAKA AERSLNAVKL NSVPAFNPSL GYTPYVVPGV LLLVLHQTLL IGTGILGAGQ WRNQGYWRRV SPLMLISGRI CVFFLIYTLF TSLYVGHCYY WYGVSVQATL GQVALFLLPF LLSTAVTGIA FSCLFTRRDL PTQVLLLISM PILFVSGFVW PLELIPEPLI WISTIIPAVP AIIGMLQLNQ MGASWVSIMP LWLHLWGLFA LFFMLALYGV NWRLKREPNC ES
|
| |