| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0568 |
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| Symbol | |
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| ID | 5609814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 692089 |
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| End bp | 693252 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640931413 |
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| Product | ABC-2 type transporter |
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| Protein accession | YP_001472308 |
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| Protein GI | 157373708 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.094665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAGCC TGATACGGCG TGAACTGAAG GCCTTGTGGA ACGATCCCTG GCAATTCGCA
CTCGTCACCT ATATTCCCAT CTTAGGGATT ATCTCGTTGT GGTGGCTGTT CAGTGCGGGT
ATGCCCAGAC AGTTGCCGGT GGCGATTGTC GATCACGATC AAAGCCAGCT CAGTCGTATG
CTGGCAAGGC GTATTCAGGC TAATCCGGCG GCTGAGCCAA TCGGCTATCA GGATATTGCC
AGCGCAAAAC GGGCGATGAC CCAAGGCGAA GTTTATGCGC TGGTGGTGCT TCCATACCGT
TTGAAGCGGG ATCTGCTTAC GGGTCATAGT CCGACGATCG AGATACGTTA TAACAGCCAA
TTCCTCTTGG TGGGTAAGTT ACTCTCGAGT CAGATCCAGC TCAGCCTGGC CGATGGCCTG
CTGCACGTGG CGAGTAAGAA GCAGTTAGCA CTTGGCGTAC CTAAGGCTCA GGCCGAGATT
AACCTTCGCC CGGTGACCAG CCAGACGACC GCACTGTATA ACTCTAATAG CAACTATATC
GGCTTTCTGG TGCCGCCGGT CCTGCTTGCG CTGGGGCAGT TGCTCGCCAT GTTGGTGTTT
GCCAATAGCC TCAATCGTGA GTTACGACTC AATACCATGA GCGAATGGTT CAGCCTGGGA
ACTAGGCGTG TGCTGTTTGC AAAAATGCTG GTCTATACCC CCTTGATTCT ACTGCAGGGC
CGCTTCATTC TCGCCATTTT GTACCAGTTC CTGAATCTTC CTCTGGCGGG GGATTTCGGG
CTATTGCTGG TGGCTCAGGT GGCGATGTTA CTTGCCGTCT GGTTGTTAGT CCTGGTGATC
TTCTTCCTGC TGCAGGATTG CGCCAGGGTG ATCAGCTTCT GCACCGCACT CTTTGCACCC
GCCTTTCCCT TTATGGGGAT CACCTTTCCC ACTCTGGATA TGCCCGTGTT GGCTCAGCTG
TGGCGAAAGC TGATGCCATC GAGCCACTAT ATCGACACCC ATGTCGGCGT GGTCAGCTAT
GGACAGGGTT GGGATACGCT TGCCGACCAA TTGATTAACT ATTGGGGATT CCTGTTTCTG
ATCCCCGTAA TTATCTTCTT GGCGACCAGA GTCAAGCGTG CACACCTGGC GGATCAATCT
CTATCCCCGG AGGGCGCTAA ATGA
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| Protein sequence | MTSLIRRELK ALWNDPWQFA LVTYIPILGI ISLWWLFSAG MPRQLPVAIV DHDQSQLSRM
LARRIQANPA AEPIGYQDIA SAKRAMTQGE VYALVVLPYR LKRDLLTGHS PTIEIRYNSQ
FLLVGKLLSS QIQLSLADGL LHVASKKQLA LGVPKAQAEI NLRPVTSQTT ALYNSNSNYI
GFLVPPVLLA LGQLLAMLVF ANSLNRELRL NTMSEWFSLG TRRVLFAKML VYTPLILLQG
RFILAILYQF LNLPLAGDFG LLLVAQVAML LAVWLLVLVI FFLLQDCARV ISFCTALFAP
AFPFMGITFP TLDMPVLAQL WRKLMPSSHY IDTHVGVVSY GQGWDTLADQ LINYWGFLFL
IPVIIFLATR VKRAHLADQS LSPEGAK
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