| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0567 |
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| Symbol | |
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| ID | 5612471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 691099 |
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| End bp | 692070 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640931412 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001472307 |
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| Protein GI | 157373707 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.142155 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGCTA ATCGTATTAT TGGGGTTGTG GCAATTATTG GCCTGGTTGG AGCGTTAGGG
TACGGCTTAA AACTGGCCTA TACACCTCAG GATGAACGCA TACAGGGTCA GATTGAGGCG
AGAGAATACA ATATCTCCTC AAAGGTACCG GGTAGGGTCG AGCAGGTGTT AGTGCGTCGT
GGGGATAAAG TTGAAGCGGG CGATCTGTTA TTTGCCATCG ACAGTCCCGA GTTGAGTGCA
AAGTTAATGC AGGCCGAAGG TGGCAGAGAT GCGGCTCAGG CGATGCAGCT TGAAGCCGAT
ACCGGTGCCC GAAAGCAGCA GGTGATGGCG TCGAAAGAGC AGTGGCTGAA GGCGAAAGCG
GCGGCCACAC TGGCCAAGAC CACATACGAC CGCGTCGAAG TTCTGTTTGT CGAAGGTGTG
CTGGCAAGAC AGAAACGCGA TGAGGCGTTC ACTCAATGGC AAGCTGCCAA GTATACGGAA
CAAGCTGCCC TGGCCATGTA TGAGATGGCA AATGAAGGTG CGCGTGAAGA GACAAAAGCT
GCCGCTGCAG GTAATGCCCG CATGGCGGAA GGTGCGGTGA ATGAGGTCAG TGCAATATTG
GCCGATAGCC AGATGCGCGC CCCTAAGTCA GGTGAGATAA GCGAAGTGCT GCTACAGCCT
GGTGAACTCG CGCCAAGTGG ATTCCCAGTG GTAAGTATCA TCGATATGGA TGATGCCTGG
GCCGTGTTTC AGGTGCGTGA AGATCAGCTA AAAGAGTTTA AGATGGGTCA AAAACATCTC
ATCTTTATCC CGGCCCTCGG AGGAGAGTAC GAATTCTCGG TAACTCATAT CAGTGTGATG
GGAGAGTTCG CCACCTGGCG TGCCACCGAG AGCGGCCATG ATTTCGATAT GCGCACCTTC
GAGATGGAGC TTCGTCCCGT GAAGACGATT CCCGATCTCA GAGTCGGCAT GACTACCTTG
ATGGCGCAAT AA
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| Protein sequence | MQANRIIGVV AIIGLVGALG YGLKLAYTPQ DERIQGQIEA REYNISSKVP GRVEQVLVRR
GDKVEAGDLL FAIDSPELSA KLMQAEGGRD AAQAMQLEAD TGARKQQVMA SKEQWLKAKA
AATLAKTTYD RVEVLFVEGV LARQKRDEAF TQWQAAKYTE QAALAMYEMA NEGAREETKA
AAAGNARMAE GAVNEVSAIL ADSQMRAPKS GEISEVLLQP GELAPSGFPV VSIIDMDDAW
AVFQVREDQL KEFKMGQKHL IFIPALGGEY EFSVTHISVM GEFATWRATE SGHDFDMRTF
EMELRPVKTI PDLRVGMTTL MAQ
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