| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0552 |
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| Symbol | |
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| ID | 5610255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 672263 |
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| End bp | 672742 |
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| Gene Length | 480 bp |
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| Protein Length | 159 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931397 |
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| Product | MSHA pilin protein MshA |
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| Protein accession | YP_001472292 |
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| Protein GI | 157373692 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00386307 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.526597 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAGC AAAGCGGTTT TACACTAATC GAATTAGTGG TTGTTATTAT CATACTAGGT
ATTTTGGCTG TAACGGCTGC ACCTAAGTTC ATTAACCTTC AAAGTGATGC TCGTGTATCT
ACGCTTCAGG GAATGAAAGC GGCCATCCAA GGGGCTAACT CACTCTATTA TTCGAAAGCG
GCAATAGGCT CTCATGAGAA GAAAGACTCA GTAACAGTTG AAGGTGTGCT TGTTTCTTAT
GGCTATCTTC AGGCTACTAA AGCGAATATG GTTTTGGCGC TTGAGATTGC AGAGAGTGAT
TGGACCATTG ACGATACTAC TGACCGAGTG GCAGGCGTTC CGCCAGCAAA GTCTACACCT
GGTGTAATCA CCATTTCGCA GACCGATGCG CCTTCTACCT GTACATTTAC CTATACAGAG
GCAGATTCAG CTTCAGACAC TCCAAGCTTC TCGGTAATGC CTGACGCGGA TAAGTGCTAA
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| Protein sequence | MNKQSGFTLI ELVVVIIILG ILAVTAAPKF INLQSDARVS TLQGMKAAIQ GANSLYYSKA
AIGSHEKKDS VTVEGVLVSY GYLQATKANM VLALEIAESD WTIDDTTDRV AGVPPAKSTP
GVITISQTDA PSTCTFTYTE ADSASDTPSF SVMPDADKC
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