Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0551 |
Symbol | |
ID | 5610254 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 671696 |
End bp | 672217 |
Gene Length | 522 bp |
Protein Length | 173 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640931396 |
Product | MSHA pilin protein MshA |
Protein accession | YP_001472291 |
Protein GI | 157373691 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4970] Tfp pilus assembly protein FimT |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000258454 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.542221 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAAAAC AAAATGGTTT TACACTAATC GAATTAGTGG TCGTTATCAT CATCTTAGGT ATCTTAGCCG TCACGGCAGC ACCTAAATTT ATCAACCTGC AGAGCGATGC ACGAGTTTCA GCTTTAGAAG GTATGAAGGC TTCTCTTCAA GGTGCAAACT CTCTGGTTTA CTCAAAAGCG GCAATAGCCG GAGATGAGAA AAAAGCTAAA GGCGATTGGA CTGGTGATAA TGGAGTTGAT ATTGGAACTG AAGACAAGGC TAAAACTCAG TATGGTTACC TACAGGGCTT ACAGGTTGAG TTAGAGAATG CTGTTGATGT GAAGTTTAAT GTTGGTACTT CAGCTACTGA CCCAAAAATA AAGACTGACA ACAAGGCTGA CTGGGTTATT TTTGTAAAGT CTGGTGTAGC TACAATTTGG CAAACAGATG CACCTGCAGC GTGTAAGTTT ACTTACACCG AATCTGATGG TGTAGGTAAA ACACCATCGT TTTCAGATAT GCCAACGGCT TCAGGCTGTT AA
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Protein sequence | MKKQNGFTLI ELVVVIIILG ILAVTAAPKF INLQSDARVS ALEGMKASLQ GANSLVYSKA AIAGDEKKAK GDWTGDNGVD IGTEDKAKTQ YGYLQGLQVE LENAVDVKFN VGTSATDPKI KTDNKADWVI FVKSGVATIW QTDAPAACKF TYTESDGVGK TPSFSDMPTA SGC
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