| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0551 |
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| Symbol | |
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| ID | 5610254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 671696 |
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| End bp | 672217 |
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| Gene Length | 522 bp |
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| Protein Length | 173 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640931396 |
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| Product | MSHA pilin protein MshA |
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| Protein accession | YP_001472291 |
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| Protein GI | 157373691 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000258454 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.542221 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAAAAC AAAATGGTTT TACACTAATC GAATTAGTGG TCGTTATCAT CATCTTAGGT
ATCTTAGCCG TCACGGCAGC ACCTAAATTT ATCAACCTGC AGAGCGATGC ACGAGTTTCA
GCTTTAGAAG GTATGAAGGC TTCTCTTCAA GGTGCAAACT CTCTGGTTTA CTCAAAAGCG
GCAATAGCCG GAGATGAGAA AAAAGCTAAA GGCGATTGGA CTGGTGATAA TGGAGTTGAT
ATTGGAACTG AAGACAAGGC TAAAACTCAG TATGGTTACC TACAGGGCTT ACAGGTTGAG
TTAGAGAATG CTGTTGATGT GAAGTTTAAT GTTGGTACTT CAGCTACTGA CCCAAAAATA
AAGACTGACA ACAAGGCTGA CTGGGTTATT TTTGTAAAGT CTGGTGTAGC TACAATTTGG
CAAACAGATG CACCTGCAGC GTGTAAGTTT ACTTACACCG AATCTGATGG TGTAGGTAAA
ACACCATCGT TTTCAGATAT GCCAACGGCT TCAGGCTGTT AA
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| Protein sequence | MKKQNGFTLI ELVVVIIILG ILAVTAAPKF INLQSDARVS ALEGMKASLQ GANSLVYSKA
AIAGDEKKAK GDWTGDNGVD IGTEDKAKTQ YGYLQGLQVE LENAVDVKFN VGTSATDPKI
KTDNKADWVI FVKSGVATIW QTDAPAACKF TYTESDGVGK TPSFSDMPTA SGC
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