| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0550 |
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| Symbol | |
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| ID | 5610253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 670947 |
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| End bp | 671603 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931395 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001472290 |
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| Protein GI | 157373690 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000424061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.764365 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGGATAA AAAATCAAAT GCTGAATCAA GTAAGTCGAA AGCAGCAAGG TTTCTCGTTA
ATTGAACTTG TGATTGTGAT TGTGATCTTA GGCCTGTTAG CCGCGACCGC AATTCCGCGC
TTTCTCAATG TCACCGATGA TGCCGAAGAT GCCAGCCTTG AAGGTGTTAC TGGCGGCTTG
GCCACGGCTG TGGGCTTCGT AAGAGCACAG TGGGAAGTCG ATGGTCGAAG TAACAGTAGC
GTAGTGCTGG ACGGAACAAC GCTTTCTTTG GATACACGTT TCGGTTATCC AACGGGAATG
GTAACTAGTG GTTCAGATAC TGGAAATGGA AATACCAGTG CGACTGCTAT GACAGATGCG
TCGTGTCAGG AAGTATTTAA ATATGTTCTT CAGAGCGCGC CTAAAAATGT AATTTATACC
GCAGATGCAA GGAAGGCGAG ATACACATTT CGTGTATTAG ATGGTTCTGG CGGAACTGCC
ATAGCCAATA CCGGTACGAC TGTGACTAAC TTAGATCTAT GTGTCTATCA TCAGGTCGCA
TCACTGGCGC TGAACACCAG TAGCGGGGTA CCTACTCCTA CACTCGATTT AAATAAAGGT
AACGGAATCG CATATAATGC CGGTACAGGT ACCGTAGTTA CATTCACAAA TAATTAA
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| Protein sequence | MRIKNQMLNQ VSRKQQGFSL IELVIVIVIL GLLAATAIPR FLNVTDDAED ASLEGVTGGL
ATAVGFVRAQ WEVDGRSNSS VVLDGTTLSL DTRFGYPTGM VTSGSDTGNG NTSATAMTDA
SCQEVFKYVL QSAPKNVIYT ADARKARYTF RVLDGSGGTA IANTGTTVTN LDLCVYHQVA
SLALNTSSGV PTPTLDLNKG NGIAYNAGTG TVVTFTNN
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