| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0544 |
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| Symbol | |
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| ID | 5610594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 663406 |
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| End bp | 665109 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931389 |
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| Product | pilus (MSHA type) biogenesis protein MshL |
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| Protein accession | YP_001472284 |
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| Protein GI | 157373684 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAGCGA TTAACATTAT TACGCCTCTG ATAGCGCTTT TGTTGGCAGC CTGCCAAACA
ACGGACAGGC CACAGCCGAT AGAATCGAAG CAAGTTTTGT CTGATTCGGT ACAAGCTGAG
CAGAACAGAA CCACGACACC ACCTCCTGCT GTTATGCCCG ATGCGATTCA AAAAGAGTTG
GCATCGAAAG AGCTACTCAG TGGTTTGTCT CCGGTATTGA GAACCGAACG TCGTTTCGAT
GTATCGGCTA ATGATGTCGA TGCAAAGGTC TTTTTCCCAA GTCTGGTGCA AGGTTCTCCC
TTGAGTGTTG CCGTTCACCC GGGCGTGTCC GGGACGATTT CACTCTCGTT GAAGGGGGTC
ACGCTCAGTG AGGCGCTTCA GGTAGTGGAA GATATCTATG GCTACGAAGT CAGCCGCGAA
GGCCGAATTT TACGCATTTT CCCATCGGGC ATGCGCACCG AAACATTTCC GCTAAACTAC
CTGTATATGG AGCGTCAGGG ACTGTCGTTG ACCTCGGTCA ACTCGGGTCG TATATCCGAT
AGTAACGACT CAAATTCGAG TGGCAGCAAC AATAGCAATA ACAGTAGCAA TAACAGCAAC
AGTAACTCCT CGAATAATAA CTCCGACTCG AATGGCAATA ATAGTAGTAA TGATACGACC
AACGGCACAT TCATTCGCTC TACGACAAAG ACCGACTTCT GGGGAGAGTT AGAGAAAACT
CTGGTCTCTA TTGTGGGCAG CACTGGTGGC GGACGTCAGG TGGTGGTAAC GCCGCAAGCT
GGCTTAGTGA CGGTTCGTGG TTATCCTAAC GAATTAAGAC AGGTGCGTAC CTTCCTACAA
ACGGCTGAAA CTCATCTTCA GCGTCAGGTC ATCCTGGAAG CGAAGATTTT AGAGGTGACG
CTTTCTGATG GTTATCAACA AGGGATCCAA TGGGATAACG TTCTCGGTCA TGTGGGGAGT
ACCGATATCA CCTTCGGCAC AAGCGAGAAC ACTGAAGGGC TGGGCGATTT AATCACCAAT
GCCATCGGCG GTGTGACCTC ATTAAGCGTT AAGGGTTCAA ACTTCAATAC TATGATCAAC
CTGCTCGATA CTCAGGGCGA TGTCGATGTA CTTTCGAGCC CCAGGGTAAC GGCTTCAAAT
AACCAAAAAG CGGTGATAAA AGTCGGTACA GATGAATACT TCGTGACTGA TGTGTCATCG
ACGACCGTTG CCGGTACCAC TCCGGTGACG ACACCTGAGG TTGAATTAAC ACCATTTTTC
TCTGGCATTG CACTGGATGT GACCCCACAA ATTGATGGTG AAGGTAATAT CTTATTGCAT
ATCCACCCCT CGGTTATCGA TATCAAAGAG CAGACGAAGG TGATTAAAAT ATCGGGCAGT
TCTCTTGAGC TACCTTTGGC TCAGAGTGAT ATTCGTGAAT CTGACACTGT GATTAAAGCC
AAAACCGGTG ATGTGGTGGT TATCGGCGGT CTGATGAAGA GCGAGAACAT AGAGGTTGAA
TCTAAGGTGC CACTCCTTGG TGATATTCCT CTGGTTGGCG AACTGTTCAC CAATAGGTCA
AAATCACTTA AGAAAACGGA ACTTGTGATC TTACTTAAGC CAACCGTTGT CGGCGCCGAT
ACCTGGAGAA AAGAGTTACA AAAATCCAAG GCACTATTGG ATCGTTGGTA TCCGGAAGAA
GATGAAAACG GACAAGGGCA GTAA
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| Protein sequence | MRAINIITPL IALLLAACQT TDRPQPIESK QVLSDSVQAE QNRTTTPPPA VMPDAIQKEL
ASKELLSGLS PVLRTERRFD VSANDVDAKV FFPSLVQGSP LSVAVHPGVS GTISLSLKGV
TLSEALQVVE DIYGYEVSRE GRILRIFPSG MRTETFPLNY LYMERQGLSL TSVNSGRISD
SNDSNSSGSN NSNNSSNNSN SNSSNNNSDS NGNNSSNDTT NGTFIRSTTK TDFWGELEKT
LVSIVGSTGG GRQVVVTPQA GLVTVRGYPN ELRQVRTFLQ TAETHLQRQV ILEAKILEVT
LSDGYQQGIQ WDNVLGHVGS TDITFGTSEN TEGLGDLITN AIGGVTSLSV KGSNFNTMIN
LLDTQGDVDV LSSPRVTASN NQKAVIKVGT DEYFVTDVSS TTVAGTTPVT TPEVELTPFF
SGIALDVTPQ IDGEGNILLH IHPSVIDIKE QTKVIKISGS SLELPLAQSD IRESDTVIKA
KTGDVVVIGG LMKSENIEVE SKVPLLGDIP LVGELFTNRS KSLKKTELVI LLKPTVVGAD
TWRKELQKSK ALLDRWYPEE DENGQGQ
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