| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0511 |
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| Symbol | |
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| ID | 5612303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 627002 |
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| End bp | 628204 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931356 |
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| Product | putative tyrosine-specific transport protein |
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| Protein accession | YP_001472252 |
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| Protein GI | 157373652 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0814] Amino acid permeases |
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| TIGRFAM ID | [TIGR00837] aromatic amino acid transport protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAA GTAAAATCTT CGGTAGCATG CTCATAATTG CCGGCACGAC CATAGGTGCG
GGTATGTTAG CCCTGCCTCT TGCCTCCTCG GGTCTGGGCT TCGGTGTCGC GAGTATTATT
ATGCTGCTCA TCTGGTCTCT TATGACCTAT ACCGCATTGC TGATGATCGA AGTGCACCAA
TTTGCCCCCG CCGATGCGAC CCTACACACC TTGGCGTATA AACTGCTGGG CCGAAAAGGG
CAGCTCATTG CCAGTTTCTC GATGATGTTT CTGTTTTATG CGTTATGTGC GGCCTATATC
GCCGGTGGCG GTGAGCAGAT CCATAGTAAG CTCACAAGCT GGTTTGAGCT GGATATCCCT
ATGCAGTTGG GGGCGATACT CTTCACTGTG TTAATTGGTA CTGTTGTGGC GATTGGTACT
CGCTCTGTCG ATATGATTAA CCGCAGCTTA TTTTCCTTGA AGTTAATTGC CTTAGTCTTG
ATGTTGTTCC TGCTTTTGCC TCACGTGTCT GTCGATAACT TAGTGGCGCT GCCTGTGCAT
CAAGGGCTCG TATTAGCCTC ATTGCCTGTG ATTTTCACCT CGTTTGGTTT TCATGGTTCT
ATTCCATCTA TCGTGCGTTA CTTAGGGAAG GATACTAAGG CATTGAGGTG GATCATTGTG
GTGGGATCGG CACTGCCGCT GGCGGTTTAC CTCTTATGGA TGCTGGCCAG TCAGGGGGTT
CTGACACAAG GTGATTTAAT GGGGAGTCAA AGCCTCAATG GGTTCATCGG CTCTCTGAGC
CGCCTGCTGC ATGACCCTAT GATAGCGAAC ACGGTATCGA TATTTGCCGA TCTCGCTCTG
GCTACCTCAT TTCTTGGTGT CAGTTTAGGC TTATATGACT TTATTGCAGA CCTGTTGAAG
CGCAGCACTA AGCCGAGCCA TAGAGTTCAG GTCGCCCTGG TGACATTTAT GCCGCCATTG
GGATTTGCGA TGTTTTACCC TCAAGGGTTT ATCGCAGCTT TAGGCTACGC GGCATTTGCG
TTAGTGGTAC TGGCGATCTT CCTTCCGGTG GCTATGGTAT CGACTCAGCG CAGACAAGTC
GGGTTAGGTG GCTACCGCGT TAGGGGCGGA GCATTGGGAC TCGGATTAGT GACCTTAGCC
GGTATTTTAA TCATGACGGT GCAATTGTTG CAGATGTTTG ATGCTTTGCC TGCTGTCGGC
TAG
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| Protein sequence | MNKSKIFGSM LIIAGTTIGA GMLALPLASS GLGFGVASII MLLIWSLMTY TALLMIEVHQ
FAPADATLHT LAYKLLGRKG QLIASFSMMF LFYALCAAYI AGGGEQIHSK LTSWFELDIP
MQLGAILFTV LIGTVVAIGT RSVDMINRSL FSLKLIALVL MLFLLLPHVS VDNLVALPVH
QGLVLASLPV IFTSFGFHGS IPSIVRYLGK DTKALRWIIV VGSALPLAVY LLWMLASQGV
LTQGDLMGSQ SLNGFIGSLS RLLHDPMIAN TVSIFADLAL ATSFLGVSLG LYDFIADLLK
RSTKPSHRVQ VALVTFMPPL GFAMFYPQGF IAALGYAAFA LVVLAIFLPV AMVSTQRRQV
GLGGYRVRGG ALGLGLVTLA GILIMTVQLL QMFDALPAVG
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