| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0508 |
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| Symbol | |
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| ID | 5614122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 623989 |
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| End bp | 624969 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931353 |
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| Product | putative CheW protein |
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| Protein accession | YP_001472249 |
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| Protein GI | 157373649 |
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| COG category | [K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG0835] Chemotaxis signal transduction protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGACT TGAAAAAATC TGAGATCCTT ACCGAGAGTG GTACCAACGA GCTCGAAATT
ATCGAGTTTC ATCTGCATAA ATTACTCCCC GATGGCGGTT TTAAAGTATG TCATTACGGG
ATTAATGTGG CTAAGGTGCG TGAGGTGATT CTGGTGCCGA GCACATCTGA TTATCCTAAT
GCTCAGCCGC ATATGGTGGG TGTATTTTCC TTAAGGGATA TCTTGATCCC CTTGGTAGAT
CTGGCCGGGT GGCTTGGGAT CCCGACGAAA GATGACTTGA CTCATAAGGT TGTCATTGTC
ACCGACTTTA ACAAGATGAT TAATGGTTTT TTAATCGATA GTGTTCGCAG TATTCATCGG
GTGTCATGGG AGCAGGTCGA ATCCCCCAGT CAGTTTTTAG AGGCGGGCGA ACAGGATTGT
GTCGTCGCCG TTGTCAGGCG GGAGGGGCAT CTGATTATGG TGTTGGATTT TGAGAAAATC
ATCGCAGATA TCAATCCGGA ATTGAGTATG GATAAATATG ATGTACTTCA GGATAAGAGT
GTCATTATCG ACGATACCAT GCTGGCTAAG CGTGAAGCTA AGACCATACT GGTTGTCGAT
GATTCCGCGT TTATCCGTAA GATGATTGAA AATACATTGA GATCGGCTGG GTATAACATT
ATTACAGCGA AAGATGGTGG CGATGCTCTC GAGATGTTAC TGGAATATGA GCGTTTAGCC
GTCGATGAGG GGGCTTCGGT TAATGATTTC GTCAGTGCCA TCATTACCGA TGTGGAGATG
CCCCGCATGG ATGGTATGCA CTTAGTGAAG CGCCTGCGTG ATACGAGTGC CTATAGCAAT
ATGCCTATTG TAATGTTCTC GTCTCTGATG AGTGAGGATA ACCGCAGTAA GGCGTTGCAA
CTCGGCGCGA ACGACACCAT AACTAAGCCA GAGATCGGTC GCATGGTCGG TATGATGGAT
GGCTACGTGC TCGATGATTA A
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| Protein sequence | MNDLKKSEIL TESGTNELEI IEFHLHKLLP DGGFKVCHYG INVAKVREVI LVPSTSDYPN
AQPHMVGVFS LRDILIPLVD LAGWLGIPTK DDLTHKVVIV TDFNKMINGF LIDSVRSIHR
VSWEQVESPS QFLEAGEQDC VVAVVRREGH LIMVLDFEKI IADINPELSM DKYDVLQDKS
VIIDDTMLAK REAKTILVVD DSAFIRKMIE NTLRSAGYNI ITAKDGGDAL EMLLEYERLA
VDEGASVNDF VSAIITDVEM PRMDGMHLVK RLRDTSAYSN MPIVMFSSLM SEDNRSKALQ
LGANDTITKP EIGRMVGMMD GYVLDD
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