Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0505 |
Symbol | |
ID | 5613920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 619832 |
End bp | 621313 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640931350 |
Product | UbiD family decarboxylase |
Protein accession | YP_001472246 |
Protein GI | 157373646 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTTA AGGATTTACG CAGTTTTATA AGCCACCTGG AAGCGAATGG TGAACTTAAA CGTATCAGCC ATCCGGTCGA TCCCCATCTT GAGATGACAG AGATCGCCGA TCGTGTGTTG CGCGCCAAGG GCCCTGCTCT GCTGTTTGAA AATCCGGTTG GCAACGAGAT GCCGGTATTG GCAAACTTGT TTGGCACACC GAAACGCGTC GCCATGGCAC TGGGTAAAGA AGATCCCCTC GCACTCAGAG AGGTCGGTGA ACTGCTGGCA TTCCTGAAGG AGCCTGAGCC ACCACGTGGC TTTAAAGACG CTATATCCAA GATCCCTATG TTCAAGCAAG CCTTGAATAT GCCGCCGAAA ACGGTTCGCA ACGCTCCCTG TCAGGAAGTA ATAAAAACCG GCAGTGATGT CGACCTGACT AAACTCCCTA TCCAGCATTG CTGGCCCGGC GATGTCGCTC CTCTGGTAAC CTGGGGACTG ACCATCACTA AGGGGCCGCG TCAGAAACGA CAAAACCTCG GGATCTACCG TCAACAGTTG CTCGATAAAG ATAAACTGAT TATGCGTTGG CTCGATCACC GTGGTGGCGC GCTCGACTTT AAAGATTTTA AAGAGAAATT CCCCGGTGAA CGTTACCCGG TAGTCGTCGC GCTGGGTGCA GATCCCGTAA CCATCTTAGG GGCCGTGACT CCGGTACCCG ACTCCATGAG CGAATATGCC TTCGCGGGCC TGCTGCGTGG TGAGCGCACC GATGTATGCA AGGCCATAAG CTGTGATCTG GAGGTTCCCG CCACCAGCGA GATCATCTTA GAAGGTTATA TCGATCCCGA GGAGATGGCC GAAGAGGGTC CCTATGGCGA TCATACCGGT TATTACAACG AGACAGATAA ATTTCCTGTC TTCACAGTGA CCCATATAAC CCACAGAAAA GACGCTATCT ACCATAGTAC CTACACCGGC CGTCCACCTG ATGAGCCAGC TATGTTGGGC GTGGCATTGA ATGAAATCTT CGTGCCGATT CTGCGCAAGC AGTACCCTGA AATTATCGAT TTCTATCTGC CACCAGAAGG CTGCTCTTAC CGTATGGCGG TGATCTCGAT ACGAAAAGAG TACCCAGGGC ACGCCAAGCG GGTGATGATG GGAGCCTGGT CATTCCTGCG CCAATTTATG TATACCAAGT TTATTATTAT CGTCGATGAA GACGTTAATT GTCGTGACTG GAACGATGTT ATCTGGGCCA TCACCACGCG TATGGATCCC AAGCGCGATA CCGTCATGAT AGAAAACACT CCTATCGATT ATCTCGACTT TGCTTCGCCT GTTGCGGGTC TGGGCTCGAA GATGGGGATG GATGCCACCA ACAAGTGGGA AGGCGAAACC GATCGTGAAT GGGGAACCCC AATCGTGATG GATGAGGCCG TGAAACAAAG AATCGATACT ATCTGGGACG ACTTGGGCAT AGACGATGCC CCTACCCTAT AA
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Protein sequence | MSFKDLRSFI SHLEANGELK RISHPVDPHL EMTEIADRVL RAKGPALLFE NPVGNEMPVL ANLFGTPKRV AMALGKEDPL ALREVGELLA FLKEPEPPRG FKDAISKIPM FKQALNMPPK TVRNAPCQEV IKTGSDVDLT KLPIQHCWPG DVAPLVTWGL TITKGPRQKR QNLGIYRQQL LDKDKLIMRW LDHRGGALDF KDFKEKFPGE RYPVVVALGA DPVTILGAVT PVPDSMSEYA FAGLLRGERT DVCKAISCDL EVPATSEIIL EGYIDPEEMA EEGPYGDHTG YYNETDKFPV FTVTHITHRK DAIYHSTYTG RPPDEPAMLG VALNEIFVPI LRKQYPEIID FYLPPEGCSY RMAVISIRKE YPGHAKRVMM GAWSFLRQFM YTKFIIIVDE DVNCRDWNDV IWAITTRMDP KRDTVMIENT PIDYLDFASP VAGLGSKMGM DATNKWEGET DREWGTPIVM DEAVKQRIDT IWDDLGIDDA PTL
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