Gene Ssed_0499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0499 
Symbol 
ID5613691 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp613800 
End bp614288 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content49% 
IMG OID640931344 
ProductNosL protein 
Protein accessionYP_001472240 
Protein GI157373640 
COG category[C] Energy production and conversion 
COG ID[COG4314] Predicted lipoprotein involved in nitrous oxide reduction 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGC TTATTCTCAT CTTGTTGGTT ATCCCGGTTC TTTTTGCATG TAGCCGAGGT 
GATGCCGTTA CTAAGTCGGT AGAGGCCCAA GCTATTCATG ATCATGAGCG TTGTCACCTG
TGTGGCATGA TGATAACGAA ATACCCGGGT CCTAAGGGGC AGTTACAGCT AAAAAGTGAA
GAGATAGTCC CTAAGTTTTG TTCTACCAGA GATATGTTCA ACTTCTCTCT TCAGCCTGAG
AATCAACGTC AGATCACCGC TCTTATGGTC CATGACATGT CGGCAACCGA CTGGGCGCAT
CCGGATGATA AGCACTTTAT CGATGCGACT CAGGCCTGGT ATGTATATGG GACCAGCAGA
AAAGCAGTGA TGGGACCTGC TGTCGCCTCG TTCGCCACCG AAGAGGGGGC TGTTCAATTT
GCTAAAGAGT TTGGGGGAGC CGTTTTAGGC TATGAGCAGA TCACCCTCGA GCTACTTCTC
GGCGAGTAA
 
Protein sequence
MKKLILILLV IPVLFACSRG DAVTKSVEAQ AIHDHERCHL CGMMITKYPG PKGQLQLKSE 
EIVPKFCSTR DMFNFSLQPE NQRQITALMV HDMSATDWAH PDDKHFIDAT QAWYVYGTSR
KAVMGPAVAS FATEEGAVQF AKEFGGAVLG YEQITLELLL GE