| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0495 |
|---|
| Symbol | |
|---|
| ID | 5613314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 610330 |
|---|
| End bp | 611121 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931340 |
|---|
| Product | peptidylprolyl isomerase, FKBP-type |
|---|
| Protein accession | YP_001472236 |
|---|
| Protein GI | 157373636 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0545] FKBP-type peptidyl-prolyl cis-trans isomerases 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TTACTAAAAG TTCACTCGCT GTGATCACTG GTCTCTCTCT GTTTGTATCT
GGTTACAGCA TCGCTGATGA CGACACCTCC TCAGATGTGC AACAACAGTC TTATAGCATA
GGCGCTTCGC TGGGTAAGTA TGTTTCCAGT CAGATATATA GCCAAAAGCA GTTAGGTGCC
GAGGTCGATG TCGACTTAGT GGTAAAAGGC GTGATCGATG CGCTTAAAGG GGAGCAGAAA
TATTCGGATG AAGAGATATT AACCTTTCTC AATCAGCGTG CCGAGCAGCT AAATGCAGCC
CGTGAGGCCG AAGATGCGCG CATCGCCCTT AAGAACATGA CTGAAGGTAG CGCATACCTT
GCCAGTAACA AGAAGAGTGA CAAGGTTACG GTCACCGAAT CTGGCCTGCA ATACGAAGTC
ATCACCATGG GAGAGGGGCG TAAGGCGAAC CCAGAAGATG TGGTAACGGT TCACTATAAG
GGGCTGTTAA TCGACGGTAC CGAGTTTGAT AACTCCTACG AACGTGATGA GCCGAACCGC
TTCGCCTTGA TGAGTGTGAT CGAAGGTTGG CAAGAGGGGA TCCCATTAAT GCCAGAGGGG
TCAACATTTA AGTTCACCAT TCCATCTGAA CTTGCCTATG GCAAGAAACA AGTGGGCATT
ATCCCACCTA GCTCCATCTT AGTTTTTGAG GTTGAGTTAG TCAAAGTTGA AGAGCCTGGT
GAGAACTCTC ACGGTATGGG CCTGAGCGGA ATGGGGATGG GAGGCATGAT GGGGGGGGGA
AAAGCCCACT AA
|
|---|
| Protein sequence | MKKFTKSSLA VITGLSLFVS GYSIADDDTS SDVQQQSYSI GASLGKYVSS QIYSQKQLGA
EVDVDLVVKG VIDALKGEQK YSDEEILTFL NQRAEQLNAA REAEDARIAL KNMTEGSAYL
ASNKKSDKVT VTESGLQYEV ITMGEGRKAN PEDVVTVHYK GLLIDGTEFD NSYERDEPNR
FALMSVIEGW QEGIPLMPEG STFKFTIPSE LAYGKKQVGI IPPSSILVFE VELVKVEEPG
ENSHGMGLSG MGMGGMMGGG KAH
|
|---|
| |