| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0467 |
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| Symbol | uvrD |
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| ID | 5612869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 577962 |
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| End bp | 580127 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931312 |
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| Product | DNA-dependent helicase II |
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| Protein accession | YP_001472208 |
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| Protein GI | 157373608 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01075] DNA helicase II |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTAT CTTCTTTACT AGACGGCCTG AATGACGAGC AGCGTGAAGC TGTAGGGGCA
CCACAATCCA GCATGTTGGT ATTGGCGGGC GCCGGCAGTG GCAAGACTCG GGTGCTAACC
CACAGAATTG CCTGGCTTAT GCAGGTTGAA CAGCAGAGTC CATATTCTAT TTTAGCGGTG
ACTTTTACCA ATAAAGCGGC CGCTGAAATG CGTGAGCGGG TGGAAAAAGT CAGCGGCAGT
AACATGGGGC GCATGTGGAT TGGTACCTTC CACGGCTTGG CTCATCGCCT GCTACGTACC
CACTATAAAG ATGCCAACTT GCCTCAAACC TTTCAGATCA TCGACTCTGA TGATCAGCTA
AGGTTAATCA AACGCATTCT TAAAAGCCTT CATCTTGATG AGAAGCAGTA TCCGCCTCGC
CAAGCTCAGG GCTATATCAA TGGAAAGAAA GATCAGGGAT TACGTCCTAA GCATATCGAT
GCGGGTGGTT TTCCTATCGA GCAAAACTTG CTGCAGATCT ATCAGGTCTA TCAAGAGTCG
TGTGACCGAG CCGGTTTAGT CGATTTCGCC GAGATCTTAC TGCGTGCCCA TGAGCTCTGG
CTTAACAAGC CTCATGTGTT GCAACACTAT CAGGACAGAT TTAAGAACAT TCTCGTCGAC
GAGTTTCAGG ATACCAACGC CATTCAGTAT GCCTGGATCC GCGTGCTTGC GGGTGATAGT
GCCAATGTGA TGATCGTCGG TGATGACGAT CAGTCCATCT ATGGCTGGCG TGGGGCACAG
GTAGAGAACT TGCATAAATT TCTCGTAGAC TTCCCTAAGG CTGAGACAAT ACGTCTGGAG
CAAAACTATC GTTCGACGGG TCATATCCTG AAAGCGTCCA ACGAACTCAT TGCCAATAAC
CCTGAGCGAT TGGGTAAGAA GTTGTGGACC GAAGATAAAG ATGGCGAGCA GATCTCTCTG
TATTGTGCAT TCAATGAGAT GGATGAGGCA CGCTTTATTG TCGGCAGAAT TAACGATTGG
CATGATATGG GCGGGGATCT CAGTAGTTGC GCGATCCTCT ATCGCTCCAA TGCCCAGTCT
CGTGTGCTCG AGGAGGCCCT GCTTCATAAA GGCTTAGCGT ATCGGATCTA TGGTGGTCTG
CGTTTCTTCG AGCGTCAGGA AATTAAGGAT GCGATGAGCT ATCTGAGGCT TATCAATAAC
AAAGACGATG ATGCCGCCTT CGAGCGTGTG GTCAATACTC CAGCACGCGG CATAGGTGGC
AGAACGCTCG ATATCCTGCG CTCAACGGCT CGTCAGCAGG AGTTAACCCT GTGGCAGACC
TGTTTGCGTG CACTCGAAGA GAAGCTATTG AGCGGCCGTG CAGCCAATGC GGTACGTGGC
TTTATGGATC TTATCGTTGA GATGCAGCAA GACACAGATG AGATGACATT GCATCGCACC
ACAGATCATG TGATAAGAGA GTCGGGCCTC AAGGCGATGT ATGAAGCGGA GAAGGGTGAG
AAGGCGCGCT CGCGTGTCGA AAACCTGGAC GAACTCGTGA CCGCCGCTCG TACCTTTATC
ATGCCCGAAG ACAGTGAGGA TATGGGCGAG CTCAATGCCT TCTTGTCCCA TGCAGCGCTT
GAGGCGGGCG AAGGGCAGGC CGATGCCTTT ACCGATGCTG TTCAGCTGAT GACACTGCAT
TCGGCCAAAG GGCTGGAGTT CCCTGTAGTA TTTATGTCCG GGGTCGAGGA GGGAATATTC
CCGAGTCAGA TGGCCATGGA CGAAGGCGAC AGACTCGATG AAGAGCGACG CCTGTGCTAC
GTAGGCATGA CCCGTGCGAT GGAGAAACTC TACATCACCT ACGCCGAAAC CCGCCGCATT
TACGGCCGTG AAAACTTTGC CAGGCCATCA CGTTTTATCA AGGAGATCCC AACGGAGCAT
GTTGAGGAGA TCCGTTTAAA GACACAAGTC ACTGCACCAC AAAGGGCAAA ACCCTCTTTC
TCTCGAAGTA CGGTCGTTAA TGATACCGGC TTTAAGATAG GTCAAAGTGT GATGCACCAA
AAGTTTGGTG AGGGCAAGGT TACCGGTACG GAAGGCAGTG GCGCCCAAGC CCGGGTACAA
GTTAACTTTT TCGATGTTGG CAGCAAATGG CTTGTTGTCG CCTATGCGCG GCTCGAGACT
TGTTAG
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| Protein sequence | MDVSSLLDGL NDEQREAVGA PQSSMLVLAG AGSGKTRVLT HRIAWLMQVE QQSPYSILAV
TFTNKAAAEM RERVEKVSGS NMGRMWIGTF HGLAHRLLRT HYKDANLPQT FQIIDSDDQL
RLIKRILKSL HLDEKQYPPR QAQGYINGKK DQGLRPKHID AGGFPIEQNL LQIYQVYQES
CDRAGLVDFA EILLRAHELW LNKPHVLQHY QDRFKNILVD EFQDTNAIQY AWIRVLAGDS
ANVMIVGDDD QSIYGWRGAQ VENLHKFLVD FPKAETIRLE QNYRSTGHIL KASNELIANN
PERLGKKLWT EDKDGEQISL YCAFNEMDEA RFIVGRINDW HDMGGDLSSC AILYRSNAQS
RVLEEALLHK GLAYRIYGGL RFFERQEIKD AMSYLRLINN KDDDAAFERV VNTPARGIGG
RTLDILRSTA RQQELTLWQT CLRALEEKLL SGRAANAVRG FMDLIVEMQQ DTDEMTLHRT
TDHVIRESGL KAMYEAEKGE KARSRVENLD ELVTAARTFI MPEDSEDMGE LNAFLSHAAL
EAGEGQADAF TDAVQLMTLH SAKGLEFPVV FMSGVEEGIF PSQMAMDEGD RLDEERRLCY
VGMTRAMEKL YITYAETRRI YGRENFARPS RFIKEIPTEH VEEIRLKTQV TAPQRAKPSF
SRSTVVNDTG FKIGQSVMHQ KFGEGKVTGT EGSGAQARVQ VNFFDVGSKW LVVAYARLET
C
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