| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0452 |
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| Symbol | |
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| ID | 5612185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 565201 |
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| End bp | 566259 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931297 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001472193 |
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| Protein GI | 157373593 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGA GTAAATTATT CATTGCGGTG CCACTGATAT TTGCAGCCTT AGCTGGTGGT
GCTTATTACT GGTGGACGCA AGTTCGTTTC TTCGAGTCGA CCGATAATGC CTATGTTGAA
GCGGATATCT CTCATATCAG CGTCAAGGTT CCGGGCTATG TGGTGATGAC AGACATCACC
GATAACCAGC ATGTCAACGC AGGCCAGTTG CTGGCACAGT TAGAAGATAA TCAGTATGAA
GCTAAGTTAG CCCAGAGTCA GGCCGAGCTT GATAGCTCAC AAGCAGAGTT GCAAACCCTT
TCGGCTAAAG TAGAGCTGCA ACACGCACTG ATCGCTCAGG CTCAGGCGGG AGTCGCAGCG
GCTGGTTCGG ATCGGTTGCG ATCGGAGCAA CAGTTGCGCC GATCTAAGAA GCTAAAAGAG
AAGAATTACA GCTCCCAGGA TGACGTGGAT CAGATGCAAG CGAGTTTCGA GTCTTCTGTC
GCGCATCTTG ATGAAGCTAA TGCGGCCTTG GTTGCAAAGC AACGAGAGCT TGCAGTATTT
AATGCGCAAC TGTTACAGGC CGATGCGAAT GTCGTGAAGG CTAAGGCGGG TTTAGAGCTT
GCCAAAATCC AGTTAGCAGA TACACAAGTC AGGGCGCCAT TTTCTGGCGT GATAGGTAAG
CGTGGGGCCC TGAAGGGGCA ATACGTTCAG CCAGGACAGG CGCTCTACAG TTTGGTACCG
GATGGGGCTG TTTGGATCAC GGCCAACTTC AAAGAGACTC AGATCCAACA TATGCAGCCC
GGCCAGTCGG TTCAGGTCAA TCTCGATGCG TTTCCCGACA AAACCTTTAC AGGTGTTATC
GATAGCCTTT CGCCGGCATC CGGTGCCAAA TTTAGTCTGT TACCCGCGGA AAATGCGACG
GGGAATTTTA CCAAGATTGT TCAGCGTATT CCGGTGAGGA TCCGCCTGGA ACTCGGTGAG
GAGCGGGAGA GACTCGTTCC AGGCTTGAGT GCGATCGTTA AGGTCGATAC CACAACATTG
TCATTAGATA GCGCACTTGC TGCTAACATC GGTCATTAA
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| Protein sequence | MSKSKLFIAV PLIFAALAGG AYYWWTQVRF FESTDNAYVE ADISHISVKV PGYVVMTDIT
DNQHVNAGQL LAQLEDNQYE AKLAQSQAEL DSSQAELQTL SAKVELQHAL IAQAQAGVAA
AGSDRLRSEQ QLRRSKKLKE KNYSSQDDVD QMQASFESSV AHLDEANAAL VAKQRELAVF
NAQLLQADAN VVKAKAGLEL AKIQLADTQV RAPFSGVIGK RGALKGQYVQ PGQALYSLVP
DGAVWITANF KETQIQHMQP GQSVQVNLDA FPDKTFTGVI DSLSPASGAK FSLLPAENAT
GNFTKIVQRI PVRIRLELGE ERERLVPGLS AIVKVDTTTL SLDSALAANI GH
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