| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0446 |
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| Symbol | |
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| ID | 5612544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 555817 |
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| End bp | 557118 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931291 |
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| Product | permease |
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| Protein accession | YP_001472187 |
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| Protein GI | 157373587 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0701] Predicted permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.302988 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGTTAG CAAATTTTAT TGACCTGTTT TTAGATTCAG CCCCCTGGTT ATTGTTGGGC
CTCGTATTAG CAGGCATGCT GAAAATGTTT GTGCCTATGG TATGGATGCA AAAACAGCTC
GGCGGCCATG GCTTTAAAAC CGTGGTTAAG GCAGCCGTAT TAGGTGCGCC TCTTCCTTTA
TGTTCCTGCG GGGTTATTCC GGCAGCGGTT GGCTTGAGAC GCTCCGGTGC ATCTAAAGCC
GCGACAACTT CATTCTTAGT CTCCACTCCC GAGACCGGTG TCGATTCGGT GACCGTCTCT
TATGTGTTGC TTGGCCCTTT CATGGCAGTA GTCAGGCCTA TTGCGGCTGT TATCAGCGCG
ATAGTGGCAG GTCTGTTGGT TGGGCGAGAT GATGATACTC CTACAGAAGT TAAGCCAAAA
GTAAAAGAAA GCGGTGAGGT GAGTGGATCT TGCTGTGGCA GTAAGAATGA AGCAAGCAAG
AAAGCAGTTA CTATGACGCC TATGGCCGCA ACAGAGCCAT TATTAAGTGG CGTAAAGCCA
GCATCTACAT CTTGTTGTAG CAGTAAGGAA AAAGCTAAAG AACCTGAAGT TTCACCTTGT
TGTAGCAGTA AGATAAAAGT TGAGGAGCCC AAAGCTTCAT GCTGTAGTTC ACAAAAGAGT
GATGCGAGTG ATAAGAGTGA AAGTTGCTGT GAATCGACCA AAGATGTCGC TACTGAGCTA
AAAGGCACTT CGGTGATCAG TCGTATCGGT AAGGGGTTGC ACTTTGCTGC AACGGATCTG
GTGCGTGACA CTACGGTTTG GTTATTAATC GGACTGTTCT TTGCTGCACT GGTACAGACT
TATGTGCCGG GGGACTTCAT GGCTAAATGG GGGGATGGCA TCTTAGCGAT GTTGGTGATG
GTACTCATCT CAATTCCTAT GTATATCTGT GCCACGGCAT CGACGCCTAT TGCTGCGGGA
TTACTCTTGG CTGGTGTTTC TCCCGGTGCT GTACTGGTAT TTATGCTCGC GGGGCCAGCG
ACCAATATCG CCACCTTAGG TGTCGTGACT AAGGAACTCG GGAAACGAGC GCTATTTGGC
TATCTCGGTG GAGTATTGGG TGTCGCACTC GTTTCGGGGA TTTTGGTCAA TTATCTGGTT
GCCACATTTG GCTTTGAAGT TATGCCGCAG ATCGGTGAGC AACATAATCT CTTGCCATCT
GTCGTGGTGT ACACCTCGGG TGTCGTACTG GCGATATTGA TGCTGAAAGT ACTACTCGAG
AAGCTACCAA AGAACTGGTG GCGCAGAGAT TGCTGTTCTT AG
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| Protein sequence | MLLANFIDLF LDSAPWLLLG LVLAGMLKMF VPMVWMQKQL GGHGFKTVVK AAVLGAPLPL
CSCGVIPAAV GLRRSGASKA ATTSFLVSTP ETGVDSVTVS YVLLGPFMAV VRPIAAVISA
IVAGLLVGRD DDTPTEVKPK VKESGEVSGS CCGSKNEASK KAVTMTPMAA TEPLLSGVKP
ASTSCCSSKE KAKEPEVSPC CSSKIKVEEP KASCCSSQKS DASDKSESCC ESTKDVATEL
KGTSVISRIG KGLHFAATDL VRDTTVWLLI GLFFAALVQT YVPGDFMAKW GDGILAMLVM
VLISIPMYIC ATASTPIAAG LLLAGVSPGA VLVFMLAGPA TNIATLGVVT KELGKRALFG
YLGGVLGVAL VSGILVNYLV ATFGFEVMPQ IGEQHNLLPS VVVYTSGVVL AILMLKVLLE
KLPKNWWRRD CCS
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