| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0431 |
|---|
| Symbol | aceE |
|---|
| ID | 5610074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 523795 |
|---|
| End bp | 526461 |
|---|
| Gene Length | 2667 bp |
|---|
| Protein Length | 888 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640931276 |
|---|
| Product | pyruvate dehydrogenase subunit E1 |
|---|
| Protein accession | YP_001472172 |
|---|
| Protein GI | 157373572 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
|---|
| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.378227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00196487 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAC ATATGCTACA AGACTTAGAT CCATTAGAGA CCCAAGAGTG GGTCGATTCT
CTGCAGGCAG TACTCGAGCA AGAGGGTCCT GAACGCGCAC ATTACCTTCT TGAAAAGCTT
ATCGACAAAG CACGTCGTAA TGGTACACAT CTGCCTTATA AAGCGACTAC AGCTTATTTG
AATACGATTC CGGCTGGCCA AGAGCCTCAT GTGCCTGGCA ACCAGGAGAT GGAGCGTCGA
ATTCGCGCCA TCGTTCGTTG GAATGCATTG GCTATGGTTC TTCGTGGTTC TAAGAAAGAT
CTTGAACTAG GTGGCCATAT CTCTAGTTTC GCTTCAAGCG CCACGATATA CGATGTCTGC
TTCAACCACT TCTTCCGCGG TCCAAATGAA AAAGATGGCG GCGATCTAGT TTACTTCCAA
GGCCATATTG CTCCCGGTAT TTATTCACGT TCTTTCCTTG AAGGACGTTT GACTGAAGAT
CAGATGAACA GCTTCCGTCA AGAAGTCGAT GGTAAAGGTC TGCCTTCATA CCCACATCCT
AAGTTAATGC CTGACTACTG GCAGTTCCCA ACGGTATCTA TGGGTCTGGG TCCTATCCAG
GCTATCTATC AAGCTCGTTT CCTTAAGTAC CTTACCGACC GTGGTCTTAA AGATTGTTCA
GAGCAAACCG TTTACTGTTT CCTTGGTGAC GGTGAGTGTG ATGAGCCAGA GACTCTAGGT
GCTATCGGTC TTGCTGCGCG TGAAGAGCTG GATAACTTAG TCTTCATCGT TAACTGTAAT
CTACAGCGTC TTGACGGCCC TGTACGTGGT AACGGCAAAA TCATTCAAGA GCTTGAAGGC
GAATTCCGTG GCGCAGGCTG GGAAGCGGTT AAAGTGATCT GGGGTCGTTA CTGGGATCCA
TTATTGGCTC GTGACACCAG CGGTAAACTA CTGCAGTTGA TGGAAGAGAC GGTCGATGGT
GAATACCAGA ACTGTAAGGC CAAAGGCGGT GCATATACTC GTGAGCATTT CTTCGGTAAA
TACCCGGAAA CTGCCGAGAT GGTTGCTAAC ATGTCAGACG ATGACATCTG GCGCCTGAAC
CGTGGTGGCC ACGATCCTGT TAAGATTTTT GCTGCGCTTC AGCATGCTAA AGACACTAAA
GGTCGTCCAA CAGTTATTCT TGCTAAAACC GTAAAAGGTT ACGGTATGGG TGACGCGGGT
GAAGGTAAAA ACATCGCTCA CAACGTGAAG AAGATGGGTG TTGAATCACT TAAGTACTTC
CGCGATCGTT TCAATATCCC GATCTCAGAT GATCAGTTAG AAGATATTCC TTTCTACCAC
CCAGGTGCAG ACTCGGAAGA GGTTAAATAC CTCAAGGCGC GTCGTGCTGA ACTACATGGT
GCCATGCCTG CACGTCGTGA GAAGTTCTCT GAAGAGCTTG AAGTACCATC ATTGAAGATT
TTCGATTCGG TACTGAAAGG TTCAAATGGC CGTGAGATCT CAAGCACAAT GGCATTCGTG
CGTATTTTGA CTGCACTGCT AAAAGACAAG AAGATTGGTA AGCAAATTGT ACCGATTATA
CCTGACGAAG CCCGTACCTT TGGTATGGAA GGCCTATTCC GCCAAGTGGG TATTTACGCT
CACGAAGGTC AAAAGTATGT CCCACAAGAT TCAGATCAAG TGGCTTACTA CCGCGAAGAC
AAGAGCGGTC AAGTATTGCA AGAAGGTATT AACGAGCTAG GTGCAATGTC ATCTTGGGTC
GCAGCGGCAA CCAGTTACTC TGTTAACGAC ACGCCAATGA TCCCGTTCTA TATCTACTAT
TCAATGTTTG GCTTCCAACG TATCGGCGAC ATGGCTTGGG CTGCAGGTGA TATGCGTGCG
CGTGGCTTCA TGGTCGGTGG AACATCGGGT CGTACAACCT TGAATGGTGA AGGTCTACAG
CATCAGGATG GTCACAGTCA TGTATTGGCT AATACTATTC CAAGCTGCGT CTCTTATGAT
CCCACTTACG GATATGAGAT CGCTGTCGTG GTTCAGGATG GTATTCGTCG CATGTATGGT
GAGCAGCAAG AAGATATCTT CTACTACTTA ACCACTATGA ACGAAAACTA CGAACAACCA
GCTATGCCAG AGGGTGCCGA AGAGGGTATC GTCAAAGGTA TCTATAAGCT GGAGACCGTT
GAAGGTTCGG GTAAAGGTAA AGTTCAGTTA ATGGGTTGTG GCACCATTCT TGAGCAAGTA
CGTAAAGCGG CTCAGGCTTT GGCTAAAGAC TTCGGTATCT CTGCAGATGT ATTCAGTGTG
ACCAGTTTCA ACGAGTTAAC TCGTGATGGT CAGGCTGCAG AGCGTTATAA CATGTTACAT
CCAACGGAAA CGCCACAAGA GGCTTACATC AGTCAAGTCA TCTCCAGTGA GTCTCCAGCC
ATCGTCGCTA CCGATTATAT GAAGATATAC GGCGAGCAGC TTCGCGCGTA CATACCTACA
GATTATAAAG TGTTAGGTAC CGATGGTTTC GGTCGTAGCG ATAGCCGTGA AAACTTACGT
CACCACTTTG AGGTTGATGC GAAATTTATC GTGATTGCAT CACTTAAGTC ACTTGTTGAC
CGTAATGAAC TGCCTGTTGA TGTGCTAACA AAAGCCATTA GCGAGTACGG TATCGATGTT
GACAAGATCA ACCCGCAGTA CGCGTAA
|
|---|
| Protein sequence | MSEHMLQDLD PLETQEWVDS LQAVLEQEGP ERAHYLLEKL IDKARRNGTH LPYKATTAYL
NTIPAGQEPH VPGNQEMERR IRAIVRWNAL AMVLRGSKKD LELGGHISSF ASSATIYDVC
FNHFFRGPNE KDGGDLVYFQ GHIAPGIYSR SFLEGRLTED QMNSFRQEVD GKGLPSYPHP
KLMPDYWQFP TVSMGLGPIQ AIYQARFLKY LTDRGLKDCS EQTVYCFLGD GECDEPETLG
AIGLAAREEL DNLVFIVNCN LQRLDGPVRG NGKIIQELEG EFRGAGWEAV KVIWGRYWDP
LLARDTSGKL LQLMEETVDG EYQNCKAKGG AYTREHFFGK YPETAEMVAN MSDDDIWRLN
RGGHDPVKIF AALQHAKDTK GRPTVILAKT VKGYGMGDAG EGKNIAHNVK KMGVESLKYF
RDRFNIPISD DQLEDIPFYH PGADSEEVKY LKARRAELHG AMPARREKFS EELEVPSLKI
FDSVLKGSNG REISSTMAFV RILTALLKDK KIGKQIVPII PDEARTFGME GLFRQVGIYA
HEGQKYVPQD SDQVAYYRED KSGQVLQEGI NELGAMSSWV AAATSYSVND TPMIPFYIYY
SMFGFQRIGD MAWAAGDMRA RGFMVGGTSG RTTLNGEGLQ HQDGHSHVLA NTIPSCVSYD
PTYGYEIAVV VQDGIRRMYG EQQEDIFYYL TTMNENYEQP AMPEGAEEGI VKGIYKLETV
EGSGKGKVQL MGCGTILEQV RKAAQALAKD FGISADVFSV TSFNELTRDG QAAERYNMLH
PTETPQEAYI SQVISSESPA IVATDYMKIY GEQLRAYIPT DYKVLGTDGF GRSDSRENLR
HHFEVDAKFI VIASLKSLVD RNELPVDVLT KAISEYGIDV DKINPQYA
|
|---|
| |