Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0421 |
Symbol | |
ID | 5614110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 513065 |
End bp | 513799 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 640931266 |
Product | hypothetical protein |
Protein accession | YP_001472162 |
Protein GI | 157373562 |
COG category | [S] Function unknown |
COG ID | [COG4582] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000381369 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTGAAC TAATTTATGA ACAGCCTTTA AATGAAAAAA CAAGAAGCTA TTTGCGACTA GAATATCTAG AACAGCAACT ACAAACAAAT TTAGCTCATG ATCATCAGCA TAGATGTTTC TATCCACTTT TTTCTCTGTG CGAATTAACC GAACGCTGTG ATTATCGTGG CGAAGTATTA AAAGATATTG ATAAACAGAT CCTTCAACTC TCTAACTGGC AAAACCTACC TCATATTGAC TCTAGGCAAG TTAGTATTTA CTTGTCCAAA CTTGCGGATG CAAGAGAAGC CCTAAGTGTT TGTGAGAGGC CAGGAAGCCA GCTTAAACTC AATCGCTTTC TTGCTGCATT ACGCCAAAGA TTTAATATGC CGGGCGCTTG CTGTAACTTT GACCTTCCTC AACTCCACTA CTGGCTTGCA AAACCATGGG ACATTCGCCA GTATGAATAC TCTGAGTGGA TTGGTCATTT TACCGCCTTG CTCGTCCCCA TTAAGTTACT GCTGGACCTA ACCAGACAAA CCACCGAATA TAGCAATGCA GTAGCCACAG CTGGTTTTTT TCAAGGAAAC AGCAATCAAG CCTTATCCTT AATCAGAGTC AAACTAGACT CCCAACAAGG ATGCTATCCT ACAATCAGCG GTCATAAAAA TCGTTACGCC ATCCATTTTG TACAATTTGA CCAACAGAAA CATTCTGATA GAAGCATAGA ATTCAAATTA GCCACCTGTT CTTAA
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Protein sequence | MTELIYEQPL NEKTRSYLRL EYLEQQLQTN LAHDHQHRCF YPLFSLCELT ERCDYRGEVL KDIDKQILQL SNWQNLPHID SRQVSIYLSK LADAREALSV CERPGSQLKL NRFLAALRQR FNMPGACCNF DLPQLHYWLA KPWDIRQYEY SEWIGHFTAL LVPIKLLLDL TRQTTEYSNA VATAGFFQGN SNQALSLIRV KLDSQQGCYP TISGHKNRYA IHFVQFDQQK HSDRSIEFKL ATCS
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