| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0411 |
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| Symbol | murC |
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| ID | 5611431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 480547 |
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| End bp | 482016 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931243 |
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| Product | UDP-N-acetylmuramate--L-alanine ligase |
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| Protein accession | YP_001472152 |
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| Protein GI | 157373552 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
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| TIGRFAM ID | [TIGR01082] UDP-N-acetylmuramate--alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.95093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00168086 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTAAGA ATCAAGAGAA GTATTCACAG TTAAGAAGCA TCATCCCGGA GATGAGAAGA
GTTAAGCATA TCTACTTCGT CGGGATCGGT GGTGCGGGTA TGGGAGGAAT TGCTGAGGTA
CTCGTTAACG AGGGGTACAA GTTATCCGGT TCCGATATCG CTGAGAATGC TGTGACACAA
AGACTTGCCT CTCTGGGCGC AAAGATCCAT ATAGGCCATC GAGAAGAGCA GGTGCATGGC
GCGGATGTTG TCGTTGTATC GACGGCGATT AGTGCGGATA ACCCTGAGCT TCTCGAGGCG
CAGGCGCTGA GGATCCCGGT GGTCCAGCGG GCAGAGATGC TTGCCGAGTT AATGCGTTAC
CGTCATGGTG TCGCCGTTGC GGGAACCCAT GGTAAAACCA CTACGACCAG TTTAATTGCC
AGTGTTTATG GTCAAGCTGA GCGCGATCCT ACCTTCGTCA TTGGTGGCCT GCTAAACAGT
GCCGGTACCA ACGCCAGATT GGGACACAGT CGATACCTCA TTGCCGAGGC GGATGAGAGT
GATGCCAGCT TCTTGCATCT GCAGCCAATG GTTAGCGTTG TGACCAACAT TGAAGCGGAT
CATATGGATA CCTATGAGGG AGATTTTGAA AAATTAAAAT CTACCTTTAT CGACTTCCTG
CATAACCTGC CTTTTTATGG CGTCGCAGTA ATGTGTATCG ACGACCCGGT TGTGCGCGAG
TTACTGCCCA AGGTAGGTCG TAAGATAGTG ACCTATGGTT TCAGTGAAGA TGCAGACGTT
CAAGCGCTCA ACTTCGTACA GGAAGCGTAT CTTAGCCGCT TTACTCTGAG AAGGGCCGGG
GTTGAAGATA TGGAGGTCGT GGTGAACTTA CCCGGCCAAC ATAATGTGCT CAATGCATTG
GCCGCGATTG CAGTTGCTAC AGAAGATGAA ATTGATGATG CGGCAATTAT TCAAGCCCTC
GCTGACTTCC AGGGTATCGG CCGTCGATTC GAGCAGTTAG GTTGTTTCGA TACCAATAAG
GGGGAGATGG TGTTGGTTGA TGATTATGGT CATCATCCCA GCGAGGTTGC TGCAACGATT
AAAGCCGCTA AAGCCGGTTG GCCGGAAAAA CGTCTGGTCA TGGTCTATCA ACCTCACAGA
TATAGCCGTA CACGGGACCT TTACGATGAC TTTGTCGAAG TCCTGTCTCA AGTGGATTGT
CTGTTGTTAC TGGATGTCTA CGCAGCGGGA GAGTCTCCGG TACCGGGGGC CGATAGCCGC
GCGTTATGCC GGTCCATACG TCAACGAGGC CAGCTCGACC CCATTTTTGT CTCCGATAGT
GAACAACTGC TCAGTTTACT GCCGGATGTT CTCCAAGCGG GAGATCTTGT ATTGACTCAG
GGAGCTGGAA ATATCGGGGC GATAGCTAAA CAGTTATCTC TATCGAGCCT TGGTTTCGAT
TTAGCGGCTT CAGGAACGGG TAAGGAATAA
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| Protein sequence | MSKNQEKYSQ LRSIIPEMRR VKHIYFVGIG GAGMGGIAEV LVNEGYKLSG SDIAENAVTQ
RLASLGAKIH IGHREEQVHG ADVVVVSTAI SADNPELLEA QALRIPVVQR AEMLAELMRY
RHGVAVAGTH GKTTTTSLIA SVYGQAERDP TFVIGGLLNS AGTNARLGHS RYLIAEADES
DASFLHLQPM VSVVTNIEAD HMDTYEGDFE KLKSTFIDFL HNLPFYGVAV MCIDDPVVRE
LLPKVGRKIV TYGFSEDADV QALNFVQEAY LSRFTLRRAG VEDMEVVVNL PGQHNVLNAL
AAIAVATEDE IDDAAIIQAL ADFQGIGRRF EQLGCFDTNK GEMVLVDDYG HHPSEVAATI
KAAKAGWPEK RLVMVYQPHR YSRTRDLYDD FVEVLSQVDC LLLLDVYAAG ESPVPGADSR
ALCRSIRQRG QLDPIFVSDS EQLLSLLPDV LQAGDLVLTQ GAGNIGAIAK QLSLSSLGFD
LAASGTGKE
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