| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0393 |
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| Symbol | |
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| ID | 5612533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 459605 |
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| End bp | 461176 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931225 |
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| Product | 2-isopropylmalate synthase |
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| Protein accession | YP_001472134 |
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| Protein GI | 157373534 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000340876 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTAACC GAGTGATTAT TTTTGATACA ACCCTACGAG ATGGCGAGCA GGCTTTAGCG
GCGAGTTTAA CGGTTAAGGA AAAGCTACAG ATAGCACTCT CACTGGAGCG TCTTGGCGTC
GATGTTATGG AGGTGGGCTT TCCGGTTTCG TCACCTGGTG ACTTTAACTC GGTGCAGACG
ATTGCAAATA CCGTTAAGAA TAGCCGGGTG TGTGCTCTCG CCAGAGCGCT TGAAAAAGAT
ATCGATGCTG CGGCGCAGTC ATTATCCGTT GCAGACCAAT TCAGAATTCA CACCTTTATC
TCTACATCAA CTATTCACGT AGAGAGCAAA TTGAAGCGCT CATTCGATCA AGTGCTTGAG
ATGGCAGTGG GTGCGGTTAA ATATGCCCGT CGATTCACCG ATGATGTTGA ATTTTCCTGT
GAGGATGCGG GTAGAACGCC TATCGACAAC CTGTGTCGCA TGGTTGAAGA AGCCATCAAG
GCGGGTGCTC GTACCATCAA TATTCCTGAC ACCGTAGGTT ATACGATACC CAGCGAGTTT
GGCGGTATCA TCGAAACCTT GTTTAACCGA GTCCCGAATA TAGATCAGGC GATCATCTCC
GTTCATTGTC ATGATGATTT GGGCCTTTCT GTCGCCAACT CGATCACGGC TGTGCAGCAA
GGTGCCAGAC AGATTGAGTG TACCGTTAAC GGTATCGGCG AGAGAGCGGG TAACTGTTCA
CTGGAAGAGA TCGCGATGAT CTTATCGACG CGTAAAGATT CACTGGGTCT TGAGACCGGG
ATTAATGCCA AAGAGATACA CCGCACCTCT AACTTGGTCA GCCAACTTTG CAACATGCCT
GTTCAGGCTA ATAAGGCGAT CGTAGGCGCT AATGCATTCA CCCACTCATC GGGTATTCAT
CAGGATGGTA TGCTGAAGTC ACAAAATACC TATGAAATTA TGACGCCTGA AAGCATAGGC
TTGCATCGTA ATAATTTGAA TATGACTTCG CGTTCGGGTC GTCACGTAAT TAAGCACCGT
ATGGAAGAGA TGGGTTACGG TAATAAAGAT TACGATATGG ATACCTTGTA TGAGGCCTTC
CTGCAGCTAG CCGATAAGAA AGGACAAGTG TTTGACTATG ATCTTGAAGC GCTGGCCTTC
ATGGAAGCAC AGGTCGATGA GGAGGCCGAT TATAAACTTG CACAATTGGT CGTTCACTCA
GACTCAACCG AAGGTAATGC AACCGCAACC GTGAAATTAG AGATCGACGG TAAAACGGTC
ACTGAGGCTG CGACCGGAAA TGGTCCCGTC GATGCGGCTT ATAACGCGAT CGCCAGAGCG
AGTCAGTGCG AGGTGAATAT CACCAGTTAT AAGTTGAGTG CGAAAGGCGA AGGGCAAAAT
GCACTGGGAC AGGTAGATAT TGAAGCCAAC TACAATGAGC AGAGCTTCCA TGGCGTCGGG
CTTGCGACTG ACGTGGTTGA AGCTTCGGTT CAAGCACTGG TACATGTGAT GAACTTGACT
TCCAGAGCCG ATAAAGTAGC TGACTGTAAA GAAAAAATAC AAAAAGACCG TAGTGAGCTG
GGTGGTGTTT AA
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| Protein sequence | MSNRVIIFDT TLRDGEQALA ASLTVKEKLQ IALSLERLGV DVMEVGFPVS SPGDFNSVQT
IANTVKNSRV CALARALEKD IDAAAQSLSV ADQFRIHTFI STSTIHVESK LKRSFDQVLE
MAVGAVKYAR RFTDDVEFSC EDAGRTPIDN LCRMVEEAIK AGARTINIPD TVGYTIPSEF
GGIIETLFNR VPNIDQAIIS VHCHDDLGLS VANSITAVQQ GARQIECTVN GIGERAGNCS
LEEIAMILST RKDSLGLETG INAKEIHRTS NLVSQLCNMP VQANKAIVGA NAFTHSSGIH
QDGMLKSQNT YEIMTPESIG LHRNNLNMTS RSGRHVIKHR MEEMGYGNKD YDMDTLYEAF
LQLADKKGQV FDYDLEALAF MEAQVDEEAD YKLAQLVVHS DSTEGNATAT VKLEIDGKTV
TEAATGNGPV DAAYNAIARA SQCEVNITSY KLSAKGEGQN ALGQVDIEAN YNEQSFHGVG
LATDVVEASV QALVHVMNLT SRADKVADCK EKIQKDRSEL GGV
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