| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0389 |
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| Symbol | |
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| ID | 5612750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 453603 |
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| End bp | 454499 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931221 |
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| Product | rarD protein |
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| Protein accession | YP_001472130 |
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| Protein GI | 157373530 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000602328 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTTGACT CTGAACACCG CAAAGGCATT GCATTCGCGC TTTGTGCCTA TACTTTGTGG
GGCTTTGCTG CCCTCTATTT TAAATTACTC GATCACGTTT CAGCGACTGA AATTTTGATC
CATCGTGTGA TCTGGTCATT TGTTTTTGTG ACCATGCTCA TGTTCATTTT TGGTGGGTTC
TCCAGGCTGA GACAAGTATT GAAACGCCCT AAACAGCTGG CGGTACTCAC ACTGACATCC
GTCCTGATCG CAGGAAATTG GCTGCTATTT ATCTGGGCAG TGAATAATGA CCACATGCTG
GATGCCAGTC TGGGATATTT CATCAACCCT CTGGTTAATG TCATGCTAGG TATGGTTTTT
CTTAGCGAAC GGCTAAGGAA GCTACAATGG TGTGCCGTAG CCTTAGCCGG GGCCGGTGTG
CTGGTTCAGT TGATCTCGTT CGGCTCGATT CCCCTGGTCT CACTGGGCCT GGCTTTCTCT
TTCGGTTTAT ACGGGTTACT GCGAAAGAAG GTCAATGTCG ATGCCAAGAC AGGACTATTA
GTCGAAACCG CGATTCTCTT TCCTATCGCT ATGATCTATC TGTTCGCCAA TATGGGGGAC
GCACTCACTA ATCTGATGAC CAATACCCTA TCTAACAACC TACTCTTGAT GGCAGCGGGT
ATAGTCACAA CCATACCGCT ACTCTGTTTC GCCGCCGCAG CGGTTAGAAT TCCGCTCTCC
ATGCTGGGAT TCTTTCAATA TATCGGCCCC AGCATCATGT TTATACTCGC AGTTACGCTC
TACAAAGAAC CCTTTGATCT GGAGAAGGGG ATCACCTTTG CTTTCATCTG GAGCGCATTG
ATCCTGTTTA GTATCGATAT GCTCTATAAG CGTAAAAAGC CTCTGAGAGA GTCCTGA
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| Protein sequence | MLDSEHRKGI AFALCAYTLW GFAALYFKLL DHVSATEILI HRVIWSFVFV TMLMFIFGGF
SRLRQVLKRP KQLAVLTLTS VLIAGNWLLF IWAVNNDHML DASLGYFINP LVNVMLGMVF
LSERLRKLQW CAVALAGAGV LVQLISFGSI PLVSLGLAFS FGLYGLLRKK VNVDAKTGLL
VETAILFPIA MIYLFANMGD ALTNLMTNTL SNNLLLMAAG IVTTIPLLCF AAAAVRIPLS
MLGFFQYIGP SIMFILAVTL YKEPFDLEKG ITFAFIWSAL ILFSIDMLYK RKKPLRES
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