Gene Ssed_0386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0386 
SymbolrpmB 
ID5612747 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp451208 
End bp451444 
Gene Length237 bp 
Protein Length78 aa 
Translation table11 
GC content43% 
IMG OID640931218 
Product50S ribosomal protein L28 
Protein accessionYP_001472127 
Protein GI157373527 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0227] Ribosomal protein L28 
TIGRFAM ID[TIGR00009] ribosomal protein L28 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00127683 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000115642 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCAAGAG TATGCCAAGT AACTGGCAAG AAACCAATGG TTGGTAACAA CCGCTCACAC 
GCGAAAAACT CGACACGTCG TCGTTTTTTA CCTAACCTAC AAAACCATCG TTTTTGGTTA
GAAGGCGAAA AGCGTTTCGT TAAGCTACGT ATCTCTACTA AAGGTATGCG TATCATCGAT
AAGAAAGGTA TTGAAGTTGT TGTTGCTGAA CTTCGTGCCC GCGGCGAGAA GGTATAA
 
Protein sequence
MSRVCQVTGK KPMVGNNRSH AKNSTRRRFL PNLQNHRFWL EGEKRFVKLR ISTKGMRIID 
KKGIEVVVAE LRARGEKV