| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0385 |
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| Symbol | radC |
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| ID | 5612713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 450403 |
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| End bp | 451080 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931217 |
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| Product | DNA repair protein RadC |
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| Protein accession | YP_001472126 |
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| Protein GI | 157373526 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2003] DNA repair proteins |
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| TIGRFAM ID | [TIGR00608] DNA repair protein radc |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00103198 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000153707 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGGGATTA AAGATTGGCC CGATGGAGAA GGGCCAAGGG AAAAACTTTT AAAATTAGGT
GTTGGACCGT TATCCGATGC GGAGTTGCTT GCTGTCGTTC TTAGAAATGG CGTACAGGGC
TTAAGCGCTG TTGAGCTGGC GCGGAATCTG ATTGGTCAAT TCGGCGGGCT TAGAGAACTT
CTCACGGCCT CTGAGATTGA GGTGTGCAGA ATGCCAGGTA TGGGGCCGGT AAAGTTTGCT
CAACTTCAGG CGGCAGCCGA GTTAAGCAAG CGAATTTCCC AACAAAATTT AAAAAGAGGA
AAAATATTGA GTGATCCTGA TTTAACTCGG GACTATTTAA TGAGACAATT AGCAGATCGT
GCCTATGAAG TGTTCGCTAT TTTATTGTTG GATAGCCAAC ATAGAGTAAT TCAGTTTGTC
GAATTATTCC GTGGCACCAT AGATTCAGCC TCGGTATATC CGCGTGATGT GGTATGCCTG
GTGCTTGAGA AAAAGGCCGC GGCCGTGATT GTCTGCCACA ACCATCCATC AGGAGTTGCG
GAGCCAAGTC TGGCCGATAG GCGAATTACT GAGCGATTGA AGTTTGCACT CGAAACCATA
GATGTTTCCT TGCTAGATCA TATGGTTGTA GGCGATCGCG AGATAGTTTC ATTTGCAGAG
CGGGGATGGA TAGATTAA
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| Protein sequence | MGIKDWPDGE GPREKLLKLG VGPLSDAELL AVVLRNGVQG LSAVELARNL IGQFGGLREL
LTASEIEVCR MPGMGPVKFA QLQAAAELSK RISQQNLKRG KILSDPDLTR DYLMRQLADR
AYEVFAILLL DSQHRVIQFV ELFRGTIDSA SVYPRDVVCL VLEKKAAAVI VCHNHPSGVA
EPSLADRRIT ERLKFALETI DVSLLDHMVV GDREIVSFAE RGWID
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