| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0359 |
|---|
| Symbol | |
|---|
| ID | 5613330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 418758 |
|---|
| End bp | 421208 |
|---|
| Gene Length | 2451 bp |
|---|
| Protein Length | 816 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640931191 |
|---|
| Product | anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein |
|---|
| Protein accession | YP_001472100 |
|---|
| Protein GI | 157373500 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0222521 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00628984 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGTC GCACGTTTCT AAAGTTCTCT GCGGCAGCTG CTGCGGTTGC AACTGTTACT
GGCTGTGAGA GTAGCAGTGC CAGCAATCCT CTGCCGGCCC CTAGTGAACC TGTACTCCCT
CCAGTAGGAG AAGGGATTAC ATGGGGTTCA TGCGCCACAA ACTGCTGGCA GGCATGTCCT
TTGAAGGTAC ACAGTAAAGA TGGCGTGATC ACGCGCATTG AAACTGAAGG CAAGGCTACA
GACGATTGGG ATAACTTCGA CCACGAGATC CGCCCCTGTC CTCGTGGACG CTCTATGCGT
CAGAAGGTCT ACAACCACGA TCGTCTCAAA TACCCAATGA AGCGCGTAGG ACGCCGAGGC
TCTGATGAGT TCGTTCGTAT TAGCTGGGAG GAAGCAGTCT CTAGCGTCGC CTCTGCTATG
GAACAGACAT ATTCTCAGTA CGGCAAGAAC GCTATCTTCA TGCCTCTGGG CGGTGGTTCT
CACGACCTGA ACACCGGCGT TACTCAATCG AGTGTGCGTC TGCTTAATAT GGCTGGCGGA
TGCTTATTCT TCCATAACGA TTATTCAGCA GCACAGTATC GCGAAGGTTC TGCTGGTATG
TACGGATATC TGGCATCTAA CGCTGGTGAT ACCGTCGGAT TCTGGAATAC AGGCTCTAGC
CTACGTAGCC TGGAAGACAG TGATCTAATG GTGTGTTTCG GGTATAACCC GATGGAAGCC
CGCCTCGGTG GTGCTGGTTC TGGTTATGAA TACTTGAATG TTAAGAAGAA AAATAACTTC
AAGACGTACT ACATAGATCC CAGGTTCACC GATACGGCTG TCACTGCCAA CGATGAATGG
ATTCCTATCC GTCCAGGTAC TGACGCAGCA CTGTGTGAAG CGATAGCGTA TGTATTGATA
GAAGATGGAT ACGCAGATAT TCCATTTCTT GAGCAATACA CCCATGGATA CGATAAGTAC
CAAGATTATA TCACCGGTGT AACAGACGGC ACCACTAAGA CTCCTGAACG CGCAGAAGGG
ATCTGCGGCA TCCCTGCAGA GAAGATCCGT GAGATTGCCC AAGCGATTGG TGCAGCATCA
GCTCCATTCG TGACACAAGG CTTCGGACCT CAACGTCAGG GCAACGGTGA GAACAATGCT
CGAGCAGTGA TGATGCTACC ATTACTTGTC GGTAAGATTA GTGGCGATGG TACTAACCAC
GGCGGCACTC CAGGTAACGA TGGTCTGTCC CATTACGCCA TGATGCCAGC TGATACTCTG
CAGGATCTAA TGAACATGAA GATCATGGAC GTTACGATCC CTGCGGCGTC ACATCTCGAT
GCTATCGAGT TCGGCATGCA GATGAAGCCA AGCACCCATG ATGTTCGCTA CTCCAACCCA
GACTTGATGG CTGCTGACAC ACCACTAGAG ACTAACGTAC GCTTTCTATG GCTGGCCTCC
TCGAACATGT TGGCTAACCA GAATGGCGAT ATCAACCGAG CAGACCGCCT ACTTAATGAT
GAAAGCTTAG TGGATTTTGT GGTTGTCGTT GAACAGCATA TGACGGCATC GGCTAAGTAC
GCAGATATCA TCCTGCCTGA AGTCAGCTGG CTTGAGATGT ATGACGTAAT CCAAAGCTAC
AACAAGATGG ATTGTGGTTC ACTCATGTAT GCCTACGGGA TCACACCAGC TGTTGACCCT
ATGTTTGAAT GTAAGCCTGC ATATGACATC TGCCACATGA TCGCCAATCA ACTGGGTATA
GGTAGTAAGT TCACCAATGG TGGAATGACC TACTTAGATC AAGTCCGTAA GGTTTTTGCC
GAATTTAAGA AAAGTAACCC ATGGATTCAA GGTGATACGT TTGAAGAGTT TGTCAGCTTC
GGACCTCAGC GCCGCCCTGC TGGTGAGCAC CCTAACGTCG GTAAAATTCG CGACTTCATC
ACTGACCCAA TAGCAAGCCC TCTTGGAACA CCAAGCGGCA AGGTTGAAAT TTACTCTCAA
TATTTCGAGG GTAAGCAGAC TCAAGCAGAG GGTACCGACG AGATCAACCC ACTGCCAGTA
TATTTTGCTT GCGACGAGTC CTATGAAGAT GCAACGGCTT CAGAGTTCCC ATTACAGTGC
ATTAACTACC ACGGCAAACA TAGCGCACAC AGCATTCACG CCAGTACCCC ATGGCTCAAT
GAAGTGCTAG AGCATCATCT GTGGCTAAAC CCAATAGATG CAGGTGCTGC GGGCGTAATC
AATGGTCAGA AGGTCATTGT AGAGAGCCGC AGAGGAAAGC TCGAAATAAC CGCTCGTGTA
ACACCACGTA TCGTCCCTGG TGTAGTTGCT ATGCCACAGG GTCAATGGCG CCGTATGAAA
GGTGACATCG ATGTGGGTGG CTGTGCAAAT ACGTTGACTG ATAGTAAGCC TAGCCCGGTT
GCGAAGTCAT TCCGCTCTAA TACTAACCGA GTCAGAGTGT ACTCGGCATA G
|
|---|
| Protein sequence | MERRTFLKFS AAAAAVATVT GCESSSASNP LPAPSEPVLP PVGEGITWGS CATNCWQACP
LKVHSKDGVI TRIETEGKAT DDWDNFDHEI RPCPRGRSMR QKVYNHDRLK YPMKRVGRRG
SDEFVRISWE EAVSSVASAM EQTYSQYGKN AIFMPLGGGS HDLNTGVTQS SVRLLNMAGG
CLFFHNDYSA AQYREGSAGM YGYLASNAGD TVGFWNTGSS LRSLEDSDLM VCFGYNPMEA
RLGGAGSGYE YLNVKKKNNF KTYYIDPRFT DTAVTANDEW IPIRPGTDAA LCEAIAYVLI
EDGYADIPFL EQYTHGYDKY QDYITGVTDG TTKTPERAEG ICGIPAEKIR EIAQAIGAAS
APFVTQGFGP QRQGNGENNA RAVMMLPLLV GKISGDGTNH GGTPGNDGLS HYAMMPADTL
QDLMNMKIMD VTIPAASHLD AIEFGMQMKP STHDVRYSNP DLMAADTPLE TNVRFLWLAS
SNMLANQNGD INRADRLLND ESLVDFVVVV EQHMTASAKY ADIILPEVSW LEMYDVIQSY
NKMDCGSLMY AYGITPAVDP MFECKPAYDI CHMIANQLGI GSKFTNGGMT YLDQVRKVFA
EFKKSNPWIQ GDTFEEFVSF GPQRRPAGEH PNVGKIRDFI TDPIASPLGT PSGKVEIYSQ
YFEGKQTQAE GTDEINPLPV YFACDESYED ATASEFPLQC INYHGKHSAH SIHASTPWLN
EVLEHHLWLN PIDAGAAGVI NGQKVIVESR RGKLEITARV TPRIVPGVVA MPQGQWRRMK
GDIDVGGCAN TLTDSKPSPV AKSFRSNTNR VRVYSA
|
|---|
| |