Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0357 |
Symbol | |
ID | 5612638 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 416026 |
End bp | 418128 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931189 |
Product | hypothetical protein |
Protein accession | YP_001472098 |
Protein GI | 157373498 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000745858 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00573689 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATACTA AACTTTCTCT TGTAGCAGTC CTTTTAGCAG GTGCTATGGT AACTGGCTGT TCTGATGATG ATTCAGAAAC AGTCTATGTC TGTGAAAATG GCGATACCGT TTCTGCTCCA GAGCAGTGCC CTACAACACC AACAGATCCT ACAGATCCAG TTGAACCGCC AGCTGTAGAC GGTCCATTCG TACATGCTGG TCGTACTATT ATCGATGGCG CCTTTTACAG TGCCACCAGC CCTAGTAACG AGTACGACCC ACTGCGTGAC TGGGAAAATA CAATGCCAGC TGGCTATAAA GAGATGCGTA ATGCCTCTTA CCCTTGGGGA ACCACTGTTT ATAATTCAGC AGCCAATGGC GAAGAGTTAT GGATGGGTAC CATCTCGAAC GGGTGGTGTG TATGGCCGTA CCAGAATATA GCCATGCCTA TCGAGTTGAC TACCTTTGAG AGTGAGACGA CAGGCTGCTC AGTTCCCGGT ACTACCGGTA CTCCATCACA GATCTTCATC TACAACTTCC GTACCGGTGC AAAGGAAGTG ATTCATGAGA GCATGCTGAC ATCAGGTGGT CCTCAGTTTA CTGAAGCGTT CAAGCCTATC AATAATACCT ATGGCTTCCG CGCCGCGGGT ACTGCCGGTG ACCTAGTATT CGTCGCTGGA CACTGGAAGA CTACAGAAGA TAAAGGTCGC CTACGTCTAT TCGTATTCAA TGCTAAGGAG CGTTCATTCG TAGGCTACCG CGATATCGTA GGTGACACCA CTCGTCGCTT CCGTACTTTG GAACATGCAG ACGGCACGAC AGGGTTCTAC ACTATCGTCG GTGCAGAAAC GGGTATGACT CAATACGGTG ACGGCCCGAC ACAGCTACTT CGTTGGGTGG GTACTCAGGA CGATCCATTC GCTGGCGGTA ATATCAAGGG TACAGACCCA CTGACGACTA CTGGCTGGAG CAAGGTTTCG ACTCAACTGG ATAATGAACA GACTCCAGAC GGAGTACAGT ACGGTATGAT CGGTGACTGG CGCCAATTCA CCCATACCGA CGGTACTGAG CGTCTGATCA TGTCAGCCTC AGCACATCCT TTCGTGTACA AAAACGGCGT ACGTAGTGAT AAGTTTAAAG AGTCAGTCAT TCTGATCTCA GATCCTATCC CTAACTCAGG CTACACAGTA GATGAGCAGC TTACTTTCCG TGAAGTATTC GGTATGGATC AGTACGACCC TGACACTAAA GGTCGCTGGG GAGCTAAGTG GGGAACAAGT GCTATTAACG ACGGCTACAT GTACTTCGGT ACTTACCACC AAGGTACAGA TGCTGCTTAT AAGCACTTCG CTAAGGCAGA CCCTGCTCTA TTCACTGAGT TAACAGGTCT AGAGTCTGCC GGAGAAGCTG ATGCGACTAA GGTAACCGAC GTTACTACAA CTAATGATGC TCAGGCTACT GATCATAAAC TGTTTATGAT TAATGAATGG CGTGCTACCT CAATCTTCCG TATTGACCTT AAAAATATCG ATGCGGTAAG CGCTGGCGAC ACCTCTAAGG TAGAGTTGCT ATACGGCTAC GAGACTATGG AGGTTAACGA CGGTAACGGT TGGAAGACTA CACCAAACTT ACTAGGTAAG AAGCCTACTC ATGGCGAAGC GGGTATGGGT AATCCAGGTA ACGTATATTC TTGGACCTCA ATTGCAAAAG ACGGCAAGTT ATTCTGGGGA TTCTTCGATG CGTTCTCTGG ACTACATGAT CTACTATTCG AAGCGTATTC CGGTGAGTAC ATGTTATTCG ACGGTATCGT ATTCCAGAAC CCTGTGTGGA AGAGGCAAAT GGCTAATAAC CCAGCCATGT GGATGTACGA TTACGCTAAA GCAGAGATGG ATGCTAACGG TCTAGGCGCA GAGTTTATTC CAGGTGGCGA TCTACTTATG ATTGAAGCTG ATGGTTCTGC ACGTAAGCTT ACTACTAACG GTTTCGGTAA CCAGTGCTCT AACGGTATCC GTAACGTTGT AGATATTGAT GACAAACTAT ACTTTGGTAC GTCAACTTGG TGTAACGTCG GTCCTACCTC TGGGCTTGAG TTCTACCAAT ATGAGCCTAG CTTAGATAAG TAG
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Protein sequence | MNTKLSLVAV LLAGAMVTGC SDDDSETVYV CENGDTVSAP EQCPTTPTDP TDPVEPPAVD GPFVHAGRTI IDGAFYSATS PSNEYDPLRD WENTMPAGYK EMRNASYPWG TTVYNSAANG EELWMGTISN GWCVWPYQNI AMPIELTTFE SETTGCSVPG TTGTPSQIFI YNFRTGAKEV IHESMLTSGG PQFTEAFKPI NNTYGFRAAG TAGDLVFVAG HWKTTEDKGR LRLFVFNAKE RSFVGYRDIV GDTTRRFRTL EHADGTTGFY TIVGAETGMT QYGDGPTQLL RWVGTQDDPF AGGNIKGTDP LTTTGWSKVS TQLDNEQTPD GVQYGMIGDW RQFTHTDGTE RLIMSASAHP FVYKNGVRSD KFKESVILIS DPIPNSGYTV DEQLTFREVF GMDQYDPDTK GRWGAKWGTS AINDGYMYFG TYHQGTDAAY KHFAKADPAL FTELTGLESA GEADATKVTD VTTTNDAQAT DHKLFMINEW RATSIFRIDL KNIDAVSAGD TSKVELLYGY ETMEVNDGNG WKTTPNLLGK KPTHGEAGMG NPGNVYSWTS IAKDGKLFWG FFDAFSGLHD LLFEAYSGEY MLFDGIVFQN PVWKRQMANN PAMWMYDYAK AEMDANGLGA EFIPGGDLLM IEADGSARKL TTNGFGNQCS NGIRNVVDID DKLYFGTSTW CNVGPTSGLE FYQYEPSLDK
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