Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0344 |
Symbol | |
ID | 5613895 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 398611 |
End bp | 400170 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640931176 |
Product | flavocytochrome c flavin subunit, putative |
Protein accession | YP_001472085 |
Protein GI | 157373485 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.892888 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGACA AACAACCAAT AAGCCTTCGC AGACGTCAGC TAATTACCGG AGGAGCAGCA CTCGCCGTTA CCGGTCTGGG AGCCTCTCTG GCTAAACCTG TCAGTGCCGC ATGTGTGCCG GCCGAAGAGG TCAAGTTTGA TGAAGTTGTC GACATCATAG TGGTAGGTAG CGGTTTTGCC GGCATGTCGG CAGCATTGCA GGCCCGGGAA GCCGGAGCCA GCGTAATGGT GGTGGATAAG ATGCCTGTCT TCGGTGGTAA CTCCACCATC AATGGCGGCG CCATGGCCGT GGCCGGCTCC CCTCTACAGC AGCAAAACGG TATTAAGGAC TCGGTAGACA CTATGGTGGC CGACATGCTT GAAGCGGGCC GTGGCATGAA TGATGTCGAG ATGCTCAAGC TGGTATGTAA TGGCACCGCC GAGTCGTGCC AATGGCTGAC CGATTATGGC GTTAAGTGGA AACCCTTTGT GCAGCACTTT GGTGGTCACT CTATTCCACG TGTGCTTCAA ACAGTCGAAA GCTCGGGGGC CGGTATCATT CGCCCTCTGG TCAAGGCAGC CAAGAAACGC GGCATAGATA TGCGCACCCA GACCAAGCTG GAGTCTTTTA TTGAGGATGA CCAGGGACGC GTAACGGGTA TCGAAGTTAA GGCCAACTAC TTCTTCCCTA AAGAGCGCTC CGGTGTGACT CGCCGTTACG GTGCCCGCAA GGGGATCATC ATGGCCACCG GCGGCTTCGG TCGTGACATC GAATATCGCA AGATGCAGCA ACCTAAACTC ACCAAAGAGT TGGATTCCAC TAACCATCCG GGCGCCAATG CCGATGCGCT GAAGCAGATG ATGCTGATCG GCGCCAACCC CATCCACCTG GATCAAATTC AGCTGGGCCC ATGGGCCTCT CCAGATGAGA AAGGTTTTGG CACCGCATCA CAATTTAACA CCATCGCGAC CTACCCCAGA GGCATAGTGG TCGATGCACG TACCGGTAAG CGTTTCTTTA ACGAACTGGC CGATCGTAAG GCCCGCGCCG ACGCCATCAT GACCCGTCGT GACGCCCAGG GACAACCAGT TTATCCCATC GGCTTTACCA ATGCCGAAGG CGCCAGCAAG GCTCAGACTC TGGATTGGGG ATTGAAATAT AACGTCATCA AGAAGGCTGA CACGCTCGAA GAGCTGGCCA AGATCTATGG CATTCCCGCC GATGCCCTCA AGGCACAGGT AGAGAGCTGG AACAAGGCCG TCGATACCGG CGAGGACAGC GAGTTTGGCA GACCCATGCA GAAGGCGATG AAGCTGGAGC AAGGTCCCTG GTACGCCGTC CGTATGTGGC CAAAGGTTCA TTACTGCATG GGTGGCGTCA AGGTAAATAC CCGCTCTGAG GTGTTGCATC TGGTGACCTA CAAACCAATT GCAGGACTGT TCGCAGCGGG TGAAGCAACC GGCGGTATCC ACGGCGCGAG TCGTCTCGGT GCCTGCGCCG TTGCTGAAGG TGTCGTCACA GGCCGTAACG CCGGCCAAAT GTGTGCCGCA TCAAAAAGTA TTGTGTTGAA ACACGTATAA
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Protein sequence | MSDKQPISLR RRQLITGGAA LAVTGLGASL AKPVSAACVP AEEVKFDEVV DIIVVGSGFA GMSAALQARE AGASVMVVDK MPVFGGNSTI NGGAMAVAGS PLQQQNGIKD SVDTMVADML EAGRGMNDVE MLKLVCNGTA ESCQWLTDYG VKWKPFVQHF GGHSIPRVLQ TVESSGAGII RPLVKAAKKR GIDMRTQTKL ESFIEDDQGR VTGIEVKANY FFPKERSGVT RRYGARKGII MATGGFGRDI EYRKMQQPKL TKELDSTNHP GANADALKQM MLIGANPIHL DQIQLGPWAS PDEKGFGTAS QFNTIATYPR GIVVDARTGK RFFNELADRK ARADAIMTRR DAQGQPVYPI GFTNAEGASK AQTLDWGLKY NVIKKADTLE ELAKIYGIPA DALKAQVESW NKAVDTGEDS EFGRPMQKAM KLEQGPWYAV RMWPKVHYCM GGVKVNTRSE VLHLVTYKPI AGLFAAGEAT GGIHGASRLG ACAVAEGVVT GRNAGQMCAA SKSIVLKHV
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