| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0335 |
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| Symbol | rpoZ |
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| ID | 5609686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 389159 |
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| End bp | 389443 |
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| Gene Length | 285 bp |
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| Protein Length | 94 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931167 |
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| Product | DNA-directed RNA polymerase subunit omega |
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| Protein accession | YP_001472076 |
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| Protein GI | 157373476 |
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| COG category | [K] Transcription |
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| COG ID | [COG1758] DNA-directed RNA polymerase, subunit K/omega |
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| TIGRFAM ID | [TIGR00690] DNA-directed RNA polymerase, omega subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.383189 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTCGCG TAACTGTAGA AGACGCCGTA AACCAAATCG GCAACCGTTT TGATATGATC
CTGGTTGCAG CGCGTCGTGC TCGCCAAATC GCTGTGCAGG GTAAAGACCC TATGGTTGAA
GAAGAGAACG ACAAGCCTAC GGTTATCGCT CTTCGCGAAA TCGAATTAGG TTTAGTCACT
GCTGACACTT TGGATGCCGA TGAGCGCCAA ACTGTTCGTG AACGTGAAGC GGCAGAAATT
GCTGCTGTTG CTGCGATTGC TGAAGGTCGT AACAACGTAA TATAA
|
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| Protein sequence | MARVTVEDAV NQIGNRFDMI LVAARRARQI AVQGKDPMVE EENDKPTVIA LREIELGLVT
ADTLDADERQ TVREREAAEI AAVAAIAEGR NNVI
|
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