| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0333 |
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| Symbol | |
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| ID | 5609684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 386567 |
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| End bp | 386950 |
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| Gene Length | 384 bp |
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| Protein Length | 127 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931165 |
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| Product | putative endoribonuclease L-PSP |
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| Protein accession | YP_001472074 |
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| Protein GI | 157373474 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
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| TIGRFAM ID | [TIGR00004] endoribonuclease L-PSP, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.117163 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAGAAA AAATCATCAT CGCCACAGAT AAAGCTCCAC AAGCGATCGG CACCTATTCT
CAAGCCGTAA GAGTTGGTAG CACCGTCTAC CTTTCGGGTC AGATCCCACT GAATCCGGAA
ACTATGCAGA TGGTCAGCGA TGAGTTTGAA GCGCAAGTGG TCCAGGTATT TGAAAACCTT
ACTGCAGTTT GTGAGGCGGC GGGTGGCTCA CTCAGCGATA TCGTTAAACT CAATATCTTC
ATGACTGACT TGAGTCACTT CGCTACCGTG AATGAGATCA TGGAACGTTA CTTCTCTCAG
CCTTATCCTG CTCGCGCCGC TATCGGAGTT AAGCAATTAC CAAAAGATTC TCTGGTTGAG
ATGGATGGAG TCATGGAGAT TTAA
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| Protein sequence | MAEKIIIATD KAPQAIGTYS QAVRVGSTVY LSGQIPLNPE TMQMVSDEFE AQVVQVFENL
TAVCEAAGGS LSDIVKLNIF MTDLSHFATV NEIMERYFSQ PYPARAAIGV KQLPKDSLVE
MDGVMEI
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