Gene Ssed_0293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0293 
Symbol 
ID5609853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp345432 
End bp347255 
Gene Length1824 bp 
Protein Length607 aa 
Translation table11 
GC content47% 
IMG OID640931125 
ProductGTP-binding protein TypA 
Protein accessionYP_001472034 
Protein GI157373434 
COG category[T] Signal transduction mechanisms 
COG ID[COG1217] Predicted membrane GTPase involved in stress response 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0644132 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.10369e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTTAGAGA ATTTACGTAA CATCGCCATT ATTGCACACG TTGACCATGG TAAAACTACC 
CTGGTAGACA AGATGCTGGC GCAGTCTGGA ACCCTTGAAA CTCGAGGAGA AGCCACTGAG
CGGGTGATGG ATTCGAACGA TCTTGAAAAG GAGCGTGGAA TCACGATTCT GGCAAAGAAT
ACGGCCATCA AGTGGAATGA TTACCGCATC AACATCGTGG ATACACCTGG TCACGCCGAT
TTCGGTGGTG AAGTTGAGCG TGTTCTCTCT ATGGTTGATT CAGTACTGCT TCTTGTTGAT
GCGGTTGACG GCCCTATGCC GCAAACTCGC TTCGTAACTA AGAAAGCATT TGCTCAAGGC
CTTAAGCCTA TTGTTGTTAT CAACAAGATT GACCGTCCAG GCGCTCGTCC TGATTGGGTT
ATCGATCAAG TATTCGATCT TTTCGACAAC TTAGGCGCTA CCGATGAGCA GCTAGATTTC
CCAATCGTTT ATGCTTCTGC ATTAAACGGT TTCGCTTCTC TTGATCCTGA AGTATCAGAG
GGTGACATGA CTCCTCTGTT TGAAACTATC GTTGAGAAAG TTTCATCTCC TGACGCTGAT
GCTGAAGGTG ATTTCCAGAT GCAGATCTCT CAAATCGACT ACAACTCATA CGTGGGTGTT
ATCGGTATCG GTCGTATCAA GCGTGGTAGC GTTAAAACTA ACCAGCAGGT CACTATTATT
GGCGCTGATG GCAAGAAACG CAACGGTAAA ATGGGCCAGG TATTAGGTTA CATGGGTCTT
GATCGTAACG AAGTTGCAGA AGCAAATGCT GGTGACATCG TTGCAATTAC AGGTCTTGGT
CAGCTACAAA TTTCAGACAC TGTCTGTGCA CCTACTACAG TAGAAGCACT ACCTCCATTG
TCTGTTGATG AGCCAACACT AACCATGACC TTCCAGGTCA ACACCTCTCC ATTCGCTGGT
AAAGAAGGTA AGTACGTGAC TTCACGTAAC ATCCTTGAGC GTCTTGAGCA GGAATTGGTT
CACAACGTTG CACTACGCGT TGAAGAGACT GATAGCCCGG ATCGTTTCCG CGTATCGGGT
CGTGGCGAAC TTCACCTATC TATCCTTATC GAAAACATGC GTCGTGAAGG TTACGAGCTA
GCCGTTTCTC GTCCAGAAGT TATCGTTAAA GAGATTGATG GCGAGATGTG TGAGCCGTTC
GAAACGCTAA CCGTTGATGT TGAAGAAGAT CATCAAGGTA CTGTTATCGA GAAGCTTGGT
ATCCGTAAGG GTGACATGAG AGACATGCAG CTAGATGGTA AGGGTCGTGT TCGTATCGAC
TTCGTTATCC CTAGCCGTGG CTTGATTGGT TTCCAAACTG AGTTCATGAC AGCGACTTCT
GGTACAGGTC TTATCTACCA TTCATTCGAC CATTACGGTC CAGTGAAAGG CGGTGATATC
GGTCAGCGTG CACGTGGCGT ATTGATCTCT AACGCAACAG GTAAAGCACT GACATTCGCA
TTGTTTAACC TTCAGGAACG TGGTCGTCTG TTTATTACAC ATGCTGCAGA AGTTTATGAA
GGTCAAGTTG TTGGTCTACA CGCTCGCGCT AACGATCTTA CAGTTAACTG TTTGAAAGGT
AAGCAGCTTA CCAACATGCG TGCATCGGGT ACCGATGAAG CACAGGTACT GACTCCACAT
ATCGAAATGA CACTTGAGCA AGCGCTTGAG TTCATCGATG ATGACGAGCT AGTAGAAGTA
ACGCCGCTGA ACATTCGTGT TCGTAAGCGT TACTTGACTG AAAACGAGCG TAAGCGTCAT
AACCGTGCGG CTAAAGACGC TTAA
 
Protein sequence
MLENLRNIAI IAHVDHGKTT LVDKMLAQSG TLETRGEATE RVMDSNDLEK ERGITILAKN 
TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVDGPMPQTR FVTKKAFAQG
LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FASLDPEVSE
GDMTPLFETI VEKVSSPDAD AEGDFQMQIS QIDYNSYVGV IGIGRIKRGS VKTNQQVTII
GADGKKRNGK MGQVLGYMGL DRNEVAEANA GDIVAITGLG QLQISDTVCA PTTVEALPPL
SVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLEQELV HNVALRVEET DSPDRFRVSG
RGELHLSILI ENMRREGYEL AVSRPEVIVK EIDGEMCEPF ETLTVDVEED HQGTVIEKLG
IRKGDMRDMQ LDGKGRVRID FVIPSRGLIG FQTEFMTATS GTGLIYHSFD HYGPVKGGDI
GQRARGVLIS NATGKALTFA LFNLQERGRL FITHAAEVYE GQVVGLHARA NDLTVNCLKG
KQLTNMRASG TDEAQVLTPH IEMTLEQALE FIDDDELVEV TPLNIRVRKR YLTENERKRH
NRAAKDA