Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0290 |
Symbol | |
ID | 5611524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 339691 |
End bp | 342486 |
Gene Length | 2796 bp |
Protein Length | 931 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640931122 |
Product | histidine kinase |
Protein accession | YP_001472031 |
Protein GI | 157373431 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000039083 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCACCGA GCAGCTATCG ACATAGCATA GGGTTCAGGC TCAATCTCAG CACGCTGATC ATAGGATTTA TTATCTGCGT GATCTTGAGT GGTTACTTTA TTCAGGAGAC ACGGGAACGA CTTAAAGTTC AAGCCCATCA TGAATTAACC CAAATAACGG ACTCATTAAA GCTTGCCCTT GAAACGAACT CACAGACCAG CAATATGATC AGAGTGGTTG GGGTGTTATC CACCTACCCA AACATCACAC GCCTTACCGT CATCAAGGCC TCAGATCTCA GCATTAGCGC CGATAGCTTA GTACAAAACA ATGGTAAAAG AGCCAATCTG GTATTTTCCA ATACCATTAT GAAGCTCATC AATAATCCCG CTAAGAGTAG TCAAAGAGAT CAGGGGATCT TGATAGATAA CAGCCTACAT CAGTCTGTAA AAATCCACCT GGTAGATCCC CAAGCAAACC GGTTAAAGCC CTACATTATC TACCTCGAAT ATAACAAGCA AGCGCTCGAA AGAATCTTAC AGCAAGCCAG AAATCACTTA ATGTTGATCG TGATTGGCGG GTTAATTTTA CTCTTGTTGA TTAATATTTT TATTCAACGA GTCGTCGTGT TAAAGCCGCT TTCAAAGATG ACGCAACAGC TACTGAATCA AGATAACAGC GAGCAAATTC CCGAACCTCT GCAAGTGTCT ACTAATGATG AATTTAGCAT TCTGGCAAAT AGTTATAATG GTTCAATCCA TAAACAACTA CTGCAAAAAG CTGAGGTCGA AAAATCACAC AGATATATCA AGAACATGGC TAGCGCGCTT CCGGTGCATT TACTGTATGT AGATATCGAC AAAAAAATTC AGTTTATCAA TCAATATAGT CTGCAGTGGT TAGCCAAACC GATGGAGGAG GTGTTAACGC AAACTTGCCG ACAGGTACTC CCCAGTCAAT TATTCAGTTT AATCGAGCGG CCCATTGAAA CTGCGTTACA AGGTGATTCA ATCACCTTAG ACGCTGAGTT TTTTCACAAA AATATGAGTC TGTTTTTTCA TATCACCCAT ATACCGGATA TCGATAACGA AGGGAGAATA AAAGGAATAT TTATCTGTAT TGAGGATAGA ACTCAGACAA GAGATAACGA AAAGAAGATT GAGAAATATG CCCACCAGCT TGAGATGAAC AACCTGGCTT TAGATGATGC CCGTGAAACC GCAGAAGCGG CTGCACAGTC TAAATCGGAG TTTCTCGCCT GTATGAGTCA TGAGATCCGC ACACCGATGA ATGGGGTTTT AGGTATGCTC ACCCTGTTAG AGCGTACAGC CCTGGATCAA AGTCAACGTA ATCACTTAGA TACCGCCCAA GGCAGCGCAA GAAACCTGCT AGGCTTAATC AACGATATTC TTGATTTTTC AAAGATTGAA TCTGGAAAAT TTCCCATAGA GTCCGTTAAT TTTAGCTTGA CCAATCTACT CAATGAAACT ATTCGCCCTC TAGCCATTCG CGCACAAGAG AAAGGCATTG AGCTTGTTAG CGACATCACC GACATAACGT CACAGAGCTT TAAAGGCGAT CCTACTCGCA TCTCTCAAGT ACTGACAAAC CTGATTGGAA ATGCGATTAA ATTTACCGAG AAAGGCAGTA TCACTGTTTA TGTGAAACAG AATGACGATA TCGAACCGCG ACTCAACTTC TCAGTTGAAG ATACCGGTAT TGGTTTGGCA TCGAATCAGC TTGAAAAGCT GTTCCAACCT TTCACTCAGG CCGATAGCTC GACGACTCGT CACTTTGGCG GAACTGGTCT GGGACTCTCG ATAGCTAAAC GTCTTACTGA GCTCATGGGG GGGAGTATTT CAGTGGTAAG TACTGAAGGT AAAGGCAGTA AATTTAGTTT CAACGTTCGA GTCGAAATCG CGAGCAAAGA TGATCTGTAT GCCACAGACC TGAACTCCCT ACCCATCCTT TTCTTTAGCC GAGGAACGCG AGCCGATCAA GTTCTGGGAA AAACGCTCAA CTTATTAAAT GCCAGCCTTA AGGTCGTCAA GGCGGCTCGA TTGGCAAATT TTAAACCGGC AAGTATTTCG GATACATATC GACCCAAACT CACCATTATT CACCTCCCCG CAGGACAAGA GGCCATCGAA ACCGAACTTG CGAAACTGGC GAGCAATACA GATTTACCCG ATACACCAAT CCTACTTTTC ATTGCAGCCA TCGATGAATC AATCATGACT CAATACCTCA ATGAACAAAT TTTCACTTAC CTCTGTAACC CATTGCATTT AGAGCAACTA TTGATAGCGT TAAAGCAGAT AGACCAAACT GCCCCTCACC TTGTTCAACG GCTTGCTCCG CAAACTCAAA GAGACTGGGA TCTGAAAAGC TATTTTGAAG ATAGGCTTCC CAAGCTGCTC CTTGTTGAAG ACAACAAAAC CAACCAAATG GTGGCTCAAG GGATCATTGC CGAATTCGGC CTGGAGATAG ACATTGCATC AGATGGGGAG CAGGCCATTG AGATACTCAA AGACTCGATA ACCTCACCAT ATCAATTAAT TTTTATGGAC TGCCAAATGC CGCGTTTAGA CGGCTATCAA ACGACTCAGA TGATCAGGGC CGGTTATACG GGTCATCAAT ACAAACATAT TCCCATCATA GCTATGACGG CGAATGCGAT GGTGGGTGAC CGGGAGCGAT GTCTGCAAGC TGGGATGAAT GACTACATAT CTAAACCACT AGACCCCGAT GATATTAAGC AAGCTTTGTT AAGTACGCTA GCTGGCCATG ATACAGAAAG CGAGATGAGG AACTGA
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Protein sequence | MAPSSYRHSI GFRLNLSTLI IGFIICVILS GYFIQETRER LKVQAHHELT QITDSLKLAL ETNSQTSNMI RVVGVLSTYP NITRLTVIKA SDLSISADSL VQNNGKRANL VFSNTIMKLI NNPAKSSQRD QGILIDNSLH QSVKIHLVDP QANRLKPYII YLEYNKQALE RILQQARNHL MLIVIGGLIL LLLINIFIQR VVVLKPLSKM TQQLLNQDNS EQIPEPLQVS TNDEFSILAN SYNGSIHKQL LQKAEVEKSH RYIKNMASAL PVHLLYVDID KKIQFINQYS LQWLAKPMEE VLTQTCRQVL PSQLFSLIER PIETALQGDS ITLDAEFFHK NMSLFFHITH IPDIDNEGRI KGIFICIEDR TQTRDNEKKI EKYAHQLEMN NLALDDARET AEAAAQSKSE FLACMSHEIR TPMNGVLGML TLLERTALDQ SQRNHLDTAQ GSARNLLGLI NDILDFSKIE SGKFPIESVN FSLTNLLNET IRPLAIRAQE KGIELVSDIT DITSQSFKGD PTRISQVLTN LIGNAIKFTE KGSITVYVKQ NDDIEPRLNF SVEDTGIGLA SNQLEKLFQP FTQADSSTTR HFGGTGLGLS IAKRLTELMG GSISVVSTEG KGSKFSFNVR VEIASKDDLY ATDLNSLPIL FFSRGTRADQ VLGKTLNLLN ASLKVVKAAR LANFKPASIS DTYRPKLTII HLPAGQEAIE TELAKLASNT DLPDTPILLF IAAIDESIMT QYLNEQIFTY LCNPLHLEQL LIALKQIDQT APHLVQRLAP QTQRDWDLKS YFEDRLPKLL LVEDNKTNQM VAQGIIAEFG LEIDIASDGE QAIEILKDSI TSPYQLIFMD CQMPRLDGYQ TTQMIRAGYT GHQYKHIPII AMTANAMVGD RERCLQAGMN DYISKPLDPD DIKQALLSTL AGHDTESEMR N
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