| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0287 |
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| Symbol | |
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| ID | 5612518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 337213 |
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| End bp | 337815 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931119 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_001472028 |
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| Protein GI | 157373428 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000147212 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAAACAG ACACTCAACT GACACGCCAG CATATTATCG ACTCTGGCTA TACGCTCATT
TCCAGCAAGG GCTTCTCAAA TGTTGGCCTG TCGCAGATCT TAAAGTTTGC CGACGTCCCG
AAAGGCTCTT TTTACCACTA CTTCAAGTCA AAGGAGCAGT TCGGTGAAGA GATCATTAAT
AGCTATTTTA AGACTTACCT AAGCGCAATT GATGAACTTT TCGCCCCAGA GAAAGGCTCA
GGCTTGGAGC GCCTGATGGA ATATTGGTTA CGCTGGCAAG CAACTCAAAG CGATACTTGT
ATCGATCAAA AATGCCTCGT AGTGAAATTA AGTGCCGAAG TTGCCGATCT GTCTGAGCCT
ATGCGTTTAG CATTAAAAAC AGGCTCTACA GGTGTTATCA GTCGTATAGC AAACTGCATT
GAAGCAGGTA TTGATGACGG TTCAATTCCT GAAATGCATG GGTTTAATAC CGCTGAAATG
CTCTACCAGA TGTGGCTAGG TGCCAGCTTG ATGAATAAGC TAAGCCGCGA TCCAAAAGTG
ATTGAACGTG TACTAGAGGC TACTCGAAAG CAACTTGGTC TAACCGTTTC AACGGCAAAT
TAA
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| Protein sequence | MKTDTQLTRQ HIIDSGYTLI SSKGFSNVGL SQILKFADVP KGSFYHYFKS KEQFGEEIIN
SYFKTYLSAI DELFAPEKGS GLERLMEYWL RWQATQSDTC IDQKCLVVKL SAEVADLSEP
MRLALKTGST GVISRIANCI EAGIDDGSIP EMHGFNTAEM LYQMWLGASL MNKLSRDPKV
IERVLEATRK QLGLTVSTAN
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