| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0285 |
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| Symbol | |
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| ID | 5612516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 335181 |
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| End bp | 335858 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931117 |
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| Product | ThiJ/PfpI domain-containing protein |
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| Protein accession | YP_001472026 |
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| Protein GI | 157373426 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0693] Putative intracellular protease/amidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000246139 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACATAT TGATGGTACT GACTTCTCAC GACAAGCTTG GCGATACAGG ATTAAAAACA
GGTTTTTGGT TAGAGGAATT TGCGAGTCCT TACTACCGTT TTAAAGACAA GAACTTCAAC
ATCACTTTAG CATCGCCAGC CGGCGGACAG CCGCCACTGG ATCCAACCAG TGAGCAAGCA
GACTTTCAAA CTGCAGCAAC AGACCGCTTC AATCAAGACA GTGAAACCCA ACAGCAGTTA
GCTACCACTC TTACTCTGGC CAGCATTAAG GCCGAAGATT ATGATGCCAT CTTCTATCCT
GGCGGCCACG GTCCACTGTG GGACCTGACC AACGACGCTC ACTCAATTGC ATTGATCCAA
GCCTTTTATC AGGCGAATAA GCCTGTCGGT CTGGTCTGTC ATGCTCCGGG GGCTCTTAAA
AATGTAAAAT CAGCCGATGG CACGCCATTG GTACAAGGTA AGCGTGTTAC TGGTTTTACC
AACACCGAAG AGGCTGCCGT TCAATTAACG GATGTCGTAC CATTTTTAGT CGAAGAGATG
ATGCAAGAAA ACGGCGCTTT GTATAGTAAG GGCGATGACT GGGCAAGTTA CCTTGCTGTT
GATGGAAATC TGGTGACTGG GCAAAATCCT GCGTCATCTG AAGTAGTTGC TGACGAGATG
ATTAAACAGC TAGGTTAA
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| Protein sequence | MNILMVLTSH DKLGDTGLKT GFWLEEFASP YYRFKDKNFN ITLASPAGGQ PPLDPTSEQA
DFQTAATDRF NQDSETQQQL ATTLTLASIK AEDYDAIFYP GGHGPLWDLT NDAHSIALIQ
AFYQANKPVG LVCHAPGALK NVKSADGTPL VQGKRVTGFT NTEEAAVQLT DVVPFLVEEM
MQENGALYSK GDDWASYLAV DGNLVTGQNP ASSEVVADEM IKQLG
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