Gene Ssed_0284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0284 
Symbol 
ID5610445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp334444 
End bp334980 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content40% 
IMG OID640931116 
Producthypothetical protein 
Protein accessionYP_001472025 
Protein GI157373425 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000217224 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGTTTAG CTCTTATTTT CAGTCTTTTG CTTTTTACAG TGATCTCCCA TGCGGCTGTT 
TATAAATGGG TCGACAAAGA TGGCAAGATC CACTATTCAG ATAAGCCAAT ACAGAATTCA
GAAGTCGTCG AATTTAAAAG TAACACTCAA AACCAGATCA CAATCCAGGC TCCCAAAAAT
TCAGCTTCTG ATACAGAAGA GCAAACAGTA CCTTCTACTC AGTATAAAAT GAGTATTCTA
ACGCCAAAAG AAGATGAAAC CATTCGAGAT AATAATGGCG ATATCACCAT AATGGCGACA
ATAACACCCG ATCTGAAACC CAAGCATCTA CTCGTCATTT TGATGGACGA CAAGGTGATT
GGCCCCGCGC AAGAAAACCC TATCTTTAGT CTTAAAAATA TTGACCGTGG CGAACACTCT
TTCGTCATTA AAGCGGTAGC CCAAAATGGC AAACAACTTG CAACGACTTC ACCAAGGAAG
ATCTTTCTCC ACCGAGCCAT AATAAACAGT AAGGCAAAAG TCACTCCTTT TAATTAG
 
Protein sequence
MRLALIFSLL LFTVISHAAV YKWVDKDGKI HYSDKPIQNS EVVEFKSNTQ NQITIQAPKN 
SASDTEEQTV PSTQYKMSIL TPKEDETIRD NNGDITIMAT ITPDLKPKHL LVILMDDKVI
GPAQENPIFS LKNIDRGEHS FVIKAVAQNG KQLATTSPRK IFLHRAIINS KAKVTPFN