Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0279 |
Symbol | |
ID | 5610578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 315877 |
End bp | 316560 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931105 |
Product | two component transcriptional regulator |
Protein accession | YP_001472020 |
Protein GI | 157373420 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000622263 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000101633 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAGCCAAA TATTACTGAT CGATGATGAC CTAGGCCTGT CTGAGCTATT GGCACAACTT CTTGAGCTAG AAGGGTTTGA GCTTACTCTT GCCCACGATG GTCAGGAAGG ACTCAAGCTA GCACTCGAAA AGCAATTTGA CCTCATTCTT TTAGACGTGA TGCTACCTAA ACTCAATGGA TTTGAGGTCC TGAAGGCGCT TCGTGTCAGC AAGCAAACTC CGGTTCTGAT GTTAACCGCA AGAGGTGATG AGATTGACCG AGTTGTCGGA CTTGAAATTG GCGCCGACGA CTATCTACCT AAACCTTTCA ATGACAGAGA GCTCGTTGCC AGAATAAAAG CCATAATAAG ACGCTCCAAT ATTTTACCGG AAGAAAAAGC AACGACTGTA TATGAATATG GTGATATTCA ACTCGACCCA GGCAGACAGG AAGTCTTTTG CCAAGATCAA CTGCTCATAT TAACAGGAAC AGAGTTCGGC CTGCTGTTTG AGATGTTACA GAATGGCGGC GAGTTGATCA GCAAAGAGAT GCTCAGCGAA AAAGTGCTGG GGAAAAAGCT GATGCCATTC GATCGCAGCC TGGATATGCA CCTTTCAAAC TTACGAAAAA AATTACCCGA ACGCACTGAT GGTCGACCAA GAGTCAAGAC TATCCGAGGT AAGGGCTACA TTTGGCTGCC CTAA
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Protein sequence | MSQILLIDDD LGLSELLAQL LELEGFELTL AHDGQEGLKL ALEKQFDLIL LDVMLPKLNG FEVLKALRVS KQTPVLMLTA RGDEIDRVVG LEIGADDYLP KPFNDRELVA RIKAIIRRSN ILPEEKATTV YEYGDIQLDP GRQEVFCQDQ LLILTGTEFG LLFEMLQNGG ELISKEMLSE KVLGKKLMPF DRSLDMHLSN LRKKLPERTD GRPRVKTIRG KGYIWLP
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