| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0278 |
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| Symbol | |
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| ID | 5610577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 314510 |
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| End bp | 315877 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931104 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001472019 |
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| Protein GI | 157373419 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000416507 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000404182 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAAAG ACAGACTCCC TAATCGAATA TTTATCAAGT TACTGCTCGG TTTCTGGCTG
TGTAGCTCCC TAATCATCGC CATCGTTGGC CTGCTGCCTC TGTTGCAGCA AAGCCACGAT
CGCGCCCCAT TGCCTCCTCA CCTTGAAAAG CTACTCGAGC GATATGCAGA GCGGATCATA
GATAATCCGG AGATCATTCA AAACAATCAA TTCAGGCGTC TTAGTCATCG TCGTGATTTT
CAGGGGAAAC CGATTCGATT TTATCTGGTA AACGATCAAG GAAGGGTCAT CAATACCGAA
AAAGTTTCAC GAGGTATGCG GCGATTCATG CTTATGGCAG AGGAAACCAG TAAACCGATC
AGTCATCAAT TTAAGGATGA GCTGCTCTTT GGCCCCTACA ATTTTGCAGT ATCAGGAAAG
CAATATTCTT TGTATGGTCG ATTTAATGAT CGTCATCCTC GTCCCTGGTT TTTCTTCTTC
GCTGAAAACA AGCTGCTCAC CTTAACACTG GCGATCGGGT TATCAGGGCT AATTTGTGGA
CTACTCGCTT GGCACTTAGG TAAACCACTT CGAACACTGA GACTCAGTGC CGATGCACTT
GCCAATGGGG ATCTAACCAA TCGTGTCGAC TATGCAACCA CTAAGCGAAA AGATGAGATA
GGTCAATTGG CTCAAGCCTT TAACGGTATG GCCGACTCTG TTGAAAATAT GGTTAATAGC
CAACAAAGAC TCATCAGTGA CATCTCACAT GAACTCCGTA CACCACTTAC CCGATTGCAG
CTCGCACTAG CCTTAGCTCG TAAGAAGGGG CAAGAGTCTG CAGAAACCGA GCGTATTGGC
TACGAGGCTG AGCAATTAGA GAAGATGATC TCAGAGCTAT TAGAGCTATC TAAAGTCAAA
CTCAATGCTC ATGATCACAA AAGACACCTC GGTTTAGCGG AGACATTAGG GCAGGTACTC
GACGATGCCG AGTTTGAGGC AGAACAGCAG CAAAAGGAGT TAATAATTAA GATAGATGAG
GAGATAGAGT TACCTCTCTA CCCTAAGCCT CTGTCCCGCG CTATTGAAAA CTTGTTACGT
AATGCGATTC GATATTCTCA ATCTTCTGTC TCAATCAAAG CCCACAAGGC AATGAACATC
GTGACAATTG AGATAACCGA CGACGGTCCG GGCATAGATA ATGAACAAGA TCTGCTGGCA
ATCTTCAAAC CTTTCTATCG TCCACAATCG GCACGAGAGA GAGAGTCCGG AGGCTGGGGG
TTAGGACTTG CGATTACCGA GGCAGCTGTA ATGGCTCATC AGGGCAAGAT TACTGCATCT
AATCTCGCCC CCCATGGGCT AAATGTGACT ATTGAGCTAC CGAGTTAA
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| Protein sequence | MIKDRLPNRI FIKLLLGFWL CSSLIIAIVG LLPLLQQSHD RAPLPPHLEK LLERYAERII
DNPEIIQNNQ FRRLSHRRDF QGKPIRFYLV NDQGRVINTE KVSRGMRRFM LMAEETSKPI
SHQFKDELLF GPYNFAVSGK QYSLYGRFND RHPRPWFFFF AENKLLTLTL AIGLSGLICG
LLAWHLGKPL RTLRLSADAL ANGDLTNRVD YATTKRKDEI GQLAQAFNGM ADSVENMVNS
QQRLISDISH ELRTPLTRLQ LALALARKKG QESAETERIG YEAEQLEKMI SELLELSKVK
LNAHDHKRHL GLAETLGQVL DDAEFEAEQQ QKELIIKIDE EIELPLYPKP LSRAIENLLR
NAIRYSQSSV SIKAHKAMNI VTIEITDDGP GIDNEQDLLA IFKPFYRPQS ARERESGGWG
LGLAITEAAV MAHQGKITAS NLAPHGLNVT IELPS
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