| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0276 |
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| Symbol | |
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| ID | 5611299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 312872 |
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| End bp | 313735 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931102 |
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| Product | transcriptional regulator, LysR family protein |
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| Protein accession | YP_001472017 |
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| Protein GI | 157373417 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00160059 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000019997 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTTAAGA GTGAATTATT AGAAGGTTTT ATCGCCGTCG CCGAATGCGG AAACTTGTCT
AAGGCTGCGG AGAAGATCTG TCGAACTCAA TCAACCCTTA GCTTACAGAT TAAAAAGCTC
GAGGAGAGTG TGGGCCAATC CCTGCTACTG AGAGATAATA AAGGTGTCAC GCTGACAGAG
CCGGGTGAAA CCCTGCTCAA CTATGCTTAT AAGATGATGC AACTAAACTC TCAGGCACTC
GATGAGCTAA AGGAGTGTAA AAACAAAGAA GTCATTCGCT TAGGTGTTCC TACCGATTAC
ATTAACCGTT ATCTCAGTAG TAGCCTGCTT GAGTTTATTC GCGAATTCAC CTGCATCGAG
TTGGTGATCG ATACTGACGT CAGTGGCAAC CTTTATAAAC GTCTGCATCA GGGGGAGTTC
GATGTTATCG TCGCGACTCA CTGGCAAACG CCAGCACCAG GACATGGCGA ACTGCTATTT
GAGCGCCGCT TTCTCTGGGC TACAGCCAAG GGCGGTAATG CCCACAAGCG CAATACTATC
CCAATGGCGC TCTACCCTGA AAACTGTCCT ATTCGAGCCC AGGTCTTTGC CAACCATCAG
ATATCGATGC GTCAGATCAA TGTTCTGCTT TCCACTCCCT CGCCAAATGC TCTATGCATG
GCGGTTGAGA ACGATTTAGC AATAGCGCCT ATCGCAGAGT TTCGCATCAA CGACAAGATG
GAAGTTCTCG ATCCTATCGA GCATAACCTG CCCCCATTGC CTGTATTTAA TGAGTCGCTG
TATCTCAATC CTGACACACA AACTAAAGCG ACGAAACAGT TAACCACACT GCTTAAGGCT
CACACAGAAA AGTATCAGCA ATAA
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| Protein sequence | MLKSELLEGF IAVAECGNLS KAAEKICRTQ STLSLQIKKL EESVGQSLLL RDNKGVTLTE
PGETLLNYAY KMMQLNSQAL DELKECKNKE VIRLGVPTDY INRYLSSSLL EFIREFTCIE
LVIDTDVSGN LYKRLHQGEF DVIVATHWQT PAPGHGELLF ERRFLWATAK GGNAHKRNTI
PMALYPENCP IRAQVFANHQ ISMRQINVLL STPSPNALCM AVENDLAIAP IAEFRINDKM
EVLDPIEHNL PPLPVFNESL YLNPDTQTKA TKQLTTLLKA HTEKYQQ
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