| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0273 |
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| Symbol | |
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| ID | 5609628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 309405 |
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| End bp | 310925 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931099 |
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| Product | flavocytochrome c |
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| Protein accession | YP_001472014 |
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| Protein GI | 157373414 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000188956 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGATG CAAATCTGCT TGGACGCCGC AATTTCATTA AAGGAATGGG AGCTGCTGCG
GGTGTTGCTA TAGCAGCGCC AGCGATGGCC ATTTCTGAGA AAGCGGACGG AGTAAAATGG
GACAAAGAGG TTGAAGTCCT AATTATTGGT TCTGGTTTTG CAGGCTTAGC CGCAGCAATC
GAAGCCTCGC GAAAAGGTGC TAAAGACGTT CATATCTTCG AGAAGATGTC ATATTTTGGT
GGTAACTCAG CCATTAATGG CGGTCTTTTC GCTGCACCGG GTACCCCGAT GCAAAAGCAA
GAAGGTGTAA AAGATTCAGT TGACAGAATG GTTGCTGATC AGATGAAGTC TGGTCGTGGT
GTTGCCGATG AAGCGCTACT GCGTCACGTT GCAGAGCATG CGGTCGAAGC GCTGCAGATG
ACTATGGATG CGGGCTCTGA ATTCCACCCA TACCTACAAC AATTAGGTGG TCATTCGGTA
GCTCGTACTT ACCAAACTAC AGTGAGCTGC GGCGCAGGAA TCACTCAGCC ACTATTAAAC
GAATGCCGTA AACTTGGTGT TCATACCCAT AACCGCGCTA AGTTTGAAGG TTTCTTAGTG
GGCGATAAGG GCGAGATTGT TGGCGTTAAA ATGCGTGAAA ATTATCATTT TGGTGAAGAC
CAGCCAGGTA AAATAAGTCA TATCCGCGCC AAACGCGGTG TGATTATGGC TACCGGTGGT
TTTGCACAGA ACATCAACCT GCGTATGGCG CAAGATCCAA CTCTGACCGC TGAAGTAGGT
TGTACCAACG CACCTGGTGC GACTGGTGAA GGTATGTACG AGATGTTCCG TCTCGGTGCA
ATCCCTGTAC ATTTGGCTCA TATCCAATCT GGCCCTTGGG CATCACCTGA TGAAGGTGGT
TTTGGTTATG TGTCTAACTA CACTATCTAT AACTTCCCTC ATTCATTGGC GATCCACCGT
CTAACCGGTA AGCGTTTCAT GAATGAAATT GCCGACCGTA AGACGCGCGC CGATGCTGAG
TTAAGCTGTC GTGATGAGAA AGGTGAGGCA CTACCTCCAA TCTTGATCAC CAGCTATAAG
GATTCGAAGA AGCATCCTAA TACTAAGAAA GTGATCAAAT ACAACGTCGG TTGGAAGTTC
GACACAATCG AAGAGCTGGC TAAGCATTTC GAGGTGCCAC TGAAGCCACT TAAGGCACAG
ATCGAAGAGT ACAACAGCTA CGTTAAGTCT GGCGACGATA AGCAGTTCGG CAAAAATATG
ACTAAGGCGA AGGACAAGTT CATCGAAGCG CCGTTTACCG TCGTTCGTTT GTGGCCAAAG
GTGCATTACT GTCAAGGTGG TGTACAGATC ACAACTAAAG CTGAAGTGAA AGATAGCTTC
ACTGGACAAC CAATCTCTGG CTTATATGCC GCGGGTGAAG TGTGTGGTGG TATTCATGGT
GTGAGTCGTC TCGGTAGTTG CTCAATTCCT GAATGTATGG TGATGGGTAT GACAGCCGCT
CGCAGTGTCA TGCAGGCCTA A
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| Protein sequence | MKDANLLGRR NFIKGMGAAA GVAIAAPAMA ISEKADGVKW DKEVEVLIIG SGFAGLAAAI
EASRKGAKDV HIFEKMSYFG GNSAINGGLF AAPGTPMQKQ EGVKDSVDRM VADQMKSGRG
VADEALLRHV AEHAVEALQM TMDAGSEFHP YLQQLGGHSV ARTYQTTVSC GAGITQPLLN
ECRKLGVHTH NRAKFEGFLV GDKGEIVGVK MRENYHFGED QPGKISHIRA KRGVIMATGG
FAQNINLRMA QDPTLTAEVG CTNAPGATGE GMYEMFRLGA IPVHLAHIQS GPWASPDEGG
FGYVSNYTIY NFPHSLAIHR LTGKRFMNEI ADRKTRADAE LSCRDEKGEA LPPILITSYK
DSKKHPNTKK VIKYNVGWKF DTIEELAKHF EVPLKPLKAQ IEEYNSYVKS GDDKQFGKNM
TKAKDKFIEA PFTVVRLWPK VHYCQGGVQI TTKAEVKDSF TGQPISGLYA AGEVCGGIHG
VSRLGSCSIP ECMVMGMTAA RSVMQA
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