| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0272 |
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| Symbol | |
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| ID | 5609627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 308219 |
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| End bp | 309136 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931098 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472013 |
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| Protein GI | 157373413 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00042007 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACTAG AAGATATTTA CCGACAGGAC CTCAGTTTGC TTATCGCATT ACAGATCCTG
GTTGAAGAGT GCAGTGTTAC TCGAGCCGCT AAGCGATTAC ATCTGAGCCA GTCTGCCACC
AGCAGAATTC TGGCTCGTCT GCGTGAAATG CTCAATGACC CACTTTTTTC CCGCGTTGGA
CAGAGGTTAG TTCCCACTCA ATTTGCCCTC GATTGCTATC AACAACTACA GCACCCCACA
GGCCAGTTAA TTGAGATGCT TACGCCTAAG GTGTTTGTGC CTGAAGCCTG TAAACAAAAA
TTCACCATCG CCGCCACCGA CTATGCGATG CAGGCCTTGG TGCCTTTTAT ATTGCCTGAT
ATCTATCGTA AGGCACCCAA TATTCAGCTT GAAATTATCC CGGTTCAACA CAAAGAGATG
CAATCACAGC TCAGCGCTCA GGGAGCCGAT ATGGCGATCT GTCGAGCCAT CGGACAAACA
TTACAGCTCA ATCAAGAGTT TCTGGGAAAG GTGGGGGTGA GTTGCCTGCT GTCGCCAGGA
CATCCTTTAG CAAACAGTGA ATTAACCTTA GAAGATTATC TGCATTATCC CCATGCGACT
ATCGCGATCA GTGATGGGGT GAAGGCGCTA CTAGATGCTG CTATTTCCGG TCATCAAGCT
CCTACGGAGC GGCTAAGGAC GTCGCACCTC GATAGTGCCT TGGCACTGCT TCCCTTCCAT
GAGCTACTAA TCATCCTACC GGCAGGAATG GCGCAGCTGG CGGCAAGCAA ACATAGGTTG
AGAGTTAAAC CGCTTCCGTT TGAGATCCCC GCATTGGATT ATAATCTGTT TTGGCATTCC
AGATGTGAGT TAGATAAGGG TCAGCAGTGG CTTAGAAAAG AGATTGCCAC TGCGACACAA
AGATTACTAG CAGACTAA
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| Protein sequence | MELEDIYRQD LSLLIALQIL VEECSVTRAA KRLHLSQSAT SRILARLREM LNDPLFSRVG
QRLVPTQFAL DCYQQLQHPT GQLIEMLTPK VFVPEACKQK FTIAATDYAM QALVPFILPD
IYRKAPNIQL EIIPVQHKEM QSQLSAQGAD MAICRAIGQT LQLNQEFLGK VGVSCLLSPG
HPLANSELTL EDYLHYPHAT IAISDGVKAL LDAAISGHQA PTERLRTSHL DSALALLPFH
ELLIILPAGM AQLAASKHRL RVKPLPFEIP ALDYNLFWHS RCELDKGQQW LRKEIATATQ
RLLAD
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