Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0242 |
Symbol | |
ID | 5614200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 277659 |
End bp | 278336 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640931068 |
Product | twin-arginine translocation pathway signal |
Protein accession | YP_001471983 |
Protein GI | 157373383 |
COG category | [C] Energy production and conversion |
COG ID | [COG0437] Fe-S-cluster-containing hydrogenase components 1 |
TIGRFAM ID | [TIGR03149] cytochrome c nitrite reductase, Fe-S protein |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAACT CAAGAAGACT CTTCCTTAAG AGCGCGTGTG CCGTTGTCGT TGCCGCATCG GGTTATACGA TTGCTAAGAG TTCCACTGAG TCTGTGGAAA TTGACGGAAA AAAATATGCC CTGGTGCATG ATGAAACGAA ATGTATTGGC TGTGATGCCT GCTCCATCGC CTGCCGGGAA GTTAACCAGG TCCCCGAGGG TGTCAGTCGC TTAAAGATTG AGCGTGAAGG GCCCTATGGT GAATATCCGG ATCAATATTT TCGCTTTACG CGTAAATCTT GCCAGCAATG TGAAGATACA CCATGCGTCA AAGTTTGCCC CACCGGGGCC GCTTATAAAG ACCCGGAAAC GGGCATCGTC AGTGTCGATT CTTGGAAGTG TGTCGGTTGT CAGTATTGTA TCGCTGCCTG CCCCTATCAG GTGCGTTTCA TTAATCCTGT TACCCACGCC GCCGATAAAT GTGATTTCTG CAAAGAGACG CGCTTAAAAG AGGGGAAGCA GCCCGCATGT GTGTCAGCAT GTCCGACCCA GGCACTTACC TTCGGCGATC TGAAAGATCC CGAGTCAAAT ATAGTCAAAG TACTTAAGTC GGCTCCCAAT TATCGCAGTA AGACTGAGCT TGGTACCCGG CCTAAGGTGT TCCGTATTGC ATCAAGAGAG GGAGAGGTAA CGCTATGA
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Protein sequence | MKNSRRLFLK SACAVVVAAS GYTIAKSSTE SVEIDGKKYA LVHDETKCIG CDACSIACRE VNQVPEGVSR LKIEREGPYG EYPDQYFRFT RKSCQQCEDT PCVKVCPTGA AYKDPETGIV SVDSWKCVGC QYCIAACPYQ VRFINPVTHA ADKCDFCKET RLKEGKQPAC VSACPTQALT FGDLKDPESN IVKVLKSAPN YRSKTELGTR PKVFRIASRE GEVTL
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