Gene Ssed_0242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0242 
Symbol 
ID5614200 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp277659 
End bp278336 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content50% 
IMG OID640931068 
Producttwin-arginine translocation pathway signal 
Protein accessionYP_001471983 
Protein GI157373383 
COG category[C] Energy production and conversion 
COG ID[COG0437] Fe-S-cluster-containing hydrogenase components 1 
TIGRFAM ID[TIGR03149] cytochrome c nitrite reductase, Fe-S protein 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAACT CAAGAAGACT CTTCCTTAAG AGCGCGTGTG CCGTTGTCGT TGCCGCATCG 
GGTTATACGA TTGCTAAGAG TTCCACTGAG TCTGTGGAAA TTGACGGAAA AAAATATGCC
CTGGTGCATG ATGAAACGAA ATGTATTGGC TGTGATGCCT GCTCCATCGC CTGCCGGGAA
GTTAACCAGG TCCCCGAGGG TGTCAGTCGC TTAAAGATTG AGCGTGAAGG GCCCTATGGT
GAATATCCGG ATCAATATTT TCGCTTTACG CGTAAATCTT GCCAGCAATG TGAAGATACA
CCATGCGTCA AAGTTTGCCC CACCGGGGCC GCTTATAAAG ACCCGGAAAC GGGCATCGTC
AGTGTCGATT CTTGGAAGTG TGTCGGTTGT CAGTATTGTA TCGCTGCCTG CCCCTATCAG
GTGCGTTTCA TTAATCCTGT TACCCACGCC GCCGATAAAT GTGATTTCTG CAAAGAGACG
CGCTTAAAAG AGGGGAAGCA GCCCGCATGT GTGTCAGCAT GTCCGACCCA GGCACTTACC
TTCGGCGATC TGAAAGATCC CGAGTCAAAT ATAGTCAAAG TACTTAAGTC GGCTCCCAAT
TATCGCAGTA AGACTGAGCT TGGTACCCGG CCTAAGGTGT TCCGTATTGC ATCAAGAGAG
GGAGAGGTAA CGCTATGA
 
Protein sequence
MKNSRRLFLK SACAVVVAAS GYTIAKSSTE SVEIDGKKYA LVHDETKCIG CDACSIACRE 
VNQVPEGVSR LKIEREGPYG EYPDQYFRFT RKSCQQCEDT PCVKVCPTGA AYKDPETGIV
SVDSWKCVGC QYCIAACPYQ VRFINPVTHA ADKCDFCKET RLKEGKQPAC VSACPTQALT
FGDLKDPESN IVKVLKSAPN YRSKTELGTR PKVFRIASRE GEVTL