Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0229 |
Symbol | |
ID | 5613470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 263789 |
End bp | 266305 |
Gene Length | 2517 bp |
Protein Length | 838 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640931055 |
Product | anaerobic dimethyl sulfoxide reductase subunit A |
Protein accession | YP_001471970 |
Protein GI | 157373370 |
COG category | [C] Energy production and conversion |
COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence [TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACGCA GAAGTTTCTT AAAAATGAGT GCAGCCATGG GTTGTGCAGC AAGCGTAACA GGTTGTAAAA CCAGTTCAGA TGATGCCAAT GTTGTACCAC CACAGCCACC TGTCGGTGAA GAGCAAATAA CCTGGTCATC TTGTCTGGTT AACTGTGGCT CTAACTGCCC GGTTAAAGTG TTTAGCCGTG ATGGTGTTAT TACACGCGTT GAAACCGATC ACGACGTTGC CGATGGCGAT GATGTTTACC AAGTGCGCGC CTGTGCCCGT GGTCGTTCAC TACGCCAGCG CACCTATGCC GTCGATCGCT TAAAAACACC GATGAAGCGT GTTGGTAAGC GTGGTGAAGG TAAGTTTGTG CCTATCAGCT GGGATGAAGC GGCAAAAACT ATCGGTACTA AGCTAACGTC TGTGATTGCC GAGCATGGCA ACAAGGCTAT CTTCCGTAGC TATGGCTCTG GGGCTTACTA TGGTTTCGCT TCTAACGCCT GTTTTAACCG TCTGTTTAAC TTAAACGGTG GCTGCCTGAA TGCCTATGGT AACTACTCTT GGGCACAGCA GATGGAAGCG GCTAAGCATA CCTTCGGTAC CGGTAGTACT TCGGGGTCAT CGACGGTGAC TCTGGCAAAC AGTGACTTCC TGTTGGGTGT GGCTTATAAC CCAAGCGAAA TTCGTCAGTC GGGTTCGGGT GAAGGTTATG ACTACCTGAA GGCACTGCAA AAGAGCAACG GCCTGAAAGT CGTGATGATC GATCCTCGCT ACACTGACTC TATGTTAGGT AAAGAGTCTA AGTGGTTGCC TATCCGCCCG GGTACCGATG CGGCCTTTGC TGAAGCCATC GCTTATCAGA TGATCAGCTC TGGTTGGGTC GACCAGAACT CACTCAGCTT TATCAACAAG TATGCCGTAG GTTTCGACGC TGCCTCTATT ACTGCGCAAA AAGAACTTTT TGCAAATAGC GGCGATGCCA CCAAGCAAGA ATACGCTAAG GTGATGAAGC CGGAGGAAAA CTACCGTGAT TACATCTTAA GCCAGGGCGT CTACGCCGAT CAGCCGTTGA AGACGTCTGA GTGGGCCGAA AAAATTACCG GTATTCCGGC TGCGCAGCTT GAGCAAATTG CGACCGACCT ACAAAATGCT AAAGCCCCCT ATATCGTCGT TGGCGCCGGT GTTAACCGTC AGGCCAATGG TGAACAAAGC ATGCGCGCGC TTTACATGCT ATCTGTATTG ACGGGTAAGT TGGGTACCTT AGGTGCATCG AACGGTGAAC TGCCATCCAT GAGCGGAATG TACCGCGCCG GTATTCCAAC GGGTAGCAAC CCGGTTAAAG AAAGCATCTC ATTCTTTACC TGGTCTGAAG CTATTCATAA CGGCGAAACC ATGACTGCAC GCAGCCACGG CGTTCGTGGT ACCGACGGTT TGGACACGCC ACTGGGCACC AATATCAAGG TCATCATCTC TGCGTCAGAC AGCTCGCTGC TGAACCAACA TGCCGAGATC AACAACACCG CTAAGATCTT AGAAGATGAA ACGGGTGTTG AGCTGATTGT CAGCTGTGAT TGCTGGATGA CTCCAGGGGC TAAGTTTGCC GATATCATCT TGCCCGATAC CAGCTGGTTA GAATCAAATG ACTTAGTTAA CGACAGCTAT GCCTCCGGTG CACTGGGTTA CATCACGGCG ATGAAGTCGG CGATTGAACC TATGTGGGAC TGTAAGTCTA TGTATGAAGC ATCAGCACTG ATTGCTAAGT ACATGGGTTG TGAAGCTGAA TTCACCGAAG GTAAAACTGA AGAGCAGTGG CTCGAAGAGT TATACCAGAA GACCAAAGAC AGCAGCACTA ACTTAGGCGT CGTGCCAGCC TTCCCGGCGA CTTACAAAGA AGCACAAGAG ATTGGCTTCT TCCGTAAAAA CATGAACGAC AACCATGTTG CGCTTAAAAG TTATATCAAT GGCGGTAAAG CACTGTCGAC CCCAAGTGGC AAGATTGAGA TCTACTCTGC CGAGCTTGCA TGGCGAGCAG CTAACTGGGA TCAAGAGCTT ACGACTGACG TTAAGGGTGA CACCATCACA GCAATTCCTC AGTACACAGT GACTTGGGAT GGTTATGAAG ATGAAGACAC CAGCACTGAT TACCCAATTC AGTTAGCGGG TTACCACACC AAGGGTCGTA CTCACTCAAG CTATCACAAC GTGCCTTGGC TTCGTGAAGC GGTTGAAGAT GCGGTTTGGG TGAACCCAAT GGATGCTGCA GAGAACGGTC TGAGCGCTGG CGATAAGATT GAGATGTATA ACGAACGTGG CTCGATTGCC GTTAAGGTGC GTATCACTCC ACGTGTCGCA CCTGGTGTGT TTGCGTTGGG TCAGGGTGCC TGGTTTAAGC CAGGTAACAC TGTTGGCAGC ACGGGTCACA TCATAGATGA AGGCGGCGCG ATCAATACGC TAACCCGCTA TCAGCCAAGC CCTGTCGCTA AAGGCAACCC ACAGCACACT AACCGTGTTG CAATTAAAAA GATTTAA
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Protein sequence | MERRSFLKMS AAMGCAASVT GCKTSSDDAN VVPPQPPVGE EQITWSSCLV NCGSNCPVKV FSRDGVITRV ETDHDVADGD DVYQVRACAR GRSLRQRTYA VDRLKTPMKR VGKRGEGKFV PISWDEAAKT IGTKLTSVIA EHGNKAIFRS YGSGAYYGFA SNACFNRLFN LNGGCLNAYG NYSWAQQMEA AKHTFGTGST SGSSTVTLAN SDFLLGVAYN PSEIRQSGSG EGYDYLKALQ KSNGLKVVMI DPRYTDSMLG KESKWLPIRP GTDAAFAEAI AYQMISSGWV DQNSLSFINK YAVGFDAASI TAQKELFANS GDATKQEYAK VMKPEENYRD YILSQGVYAD QPLKTSEWAE KITGIPAAQL EQIATDLQNA KAPYIVVGAG VNRQANGEQS MRALYMLSVL TGKLGTLGAS NGELPSMSGM YRAGIPTGSN PVKESISFFT WSEAIHNGET MTARSHGVRG TDGLDTPLGT NIKVIISASD SSLLNQHAEI NNTAKILEDE TGVELIVSCD CWMTPGAKFA DIILPDTSWL ESNDLVNDSY ASGALGYITA MKSAIEPMWD CKSMYEASAL IAKYMGCEAE FTEGKTEEQW LEELYQKTKD SSTNLGVVPA FPATYKEAQE IGFFRKNMND NHVALKSYIN GGKALSTPSG KIEIYSAELA WRAANWDQEL TTDVKGDTIT AIPQYTVTWD GYEDEDTSTD YPIQLAGYHT KGRTHSSYHN VPWLREAVED AVWVNPMDAA ENGLSAGDKI EMYNERGSIA VKVRITPRVA PGVFALGQGA WFKPGNTVGS TGHIIDEGGA INTLTRYQPS PVAKGNPQHT NRVAIKKI
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