Gene Ssed_0177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0177 
Symbol 
ID5614115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp201710 
End bp202510 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content51% 
IMG OID640931003 
Productcompetence protein ComF 
Protein accessionYP_001471918 
Protein GI157373318 
COG category[R] General function prediction only 
COG ID[COG1040] Predicted amidophosphoribosyltransferases 
TIGRFAM ID[TIGR00201] comF family protein 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAAAG ATTCTATAGC GCAGCGTGCA TTGACCGGTT TGGTTAAGGC TGCACAGTTC 
GGCAGAAGAC GATTACAGGC GCTCTATCGT GGAGTCGTTA ACCTGCTGGC TGCTAGTTTA
CCGAATCGAT GTCTGATGTG CCATCAAAGC ATTGAGTTGC CTGATTCGGG GATCTGCTCC
GTATGTCTAG TCACCGGTCT CTATCAAGTT CCCGTCTGCC TGGGCTGTGG TCGTGCCATG
CAAGTCGAAG CCATCTACTG TGGCGCCTGT ACCTCGTCTC GACCCCTCAT GATTATTGCC
CCCTGCAGCT ACCATCAAGG GTTGGGAGAG TGGGTCGGGC AGATGAAGTA CCAGACACAA
TTTTCAGCAT TGCCGGTGTT ATCACATGTG TTAGCGAACC GGATTCTTTA CTTAGAGGAG
ATTGGATTAC TGCAACTTCC TCAAGTATTA ATTCCGGTGC CCCTGCACAG TAACAGATTA
AGGAAGAGGG GCTTTAATCA GGCATATCTG ATTGCGGATG CCCTTACCGG CAGGCTCAAT
ATTCCGGTGG TAACCGAAGG GCTAACCCGG ACTATAGATA CGTGCTCTCA GGCTGGATTA
ACGGGTAAGC AGCGGCGGAA AAATTTGTCA GGAGCCTTTA GCTTAGAGGC TCACTTCTCC
TATCAGCGTA TCGCACTGAT CGATGATGTC GTGACCACAG GGACGACGGC AATAGAGATT
GCGGAGCTTT TTGAGAAGCG ACATATTCAT GTGCAGATAT GGTGCCTCGC GAGGGCAGAA
GCACCAGGGT TAATGGATTA G
 
Protein sequence
MIKDSIAQRA LTGLVKAAQF GRRRLQALYR GVVNLLAASL PNRCLMCHQS IELPDSGICS 
VCLVTGLYQV PVCLGCGRAM QVEAIYCGAC TSSRPLMIIA PCSYHQGLGE WVGQMKYQTQ
FSALPVLSHV LANRILYLEE IGLLQLPQVL IPVPLHSNRL RKRGFNQAYL IADALTGRLN
IPVVTEGLTR TIDTCSQAGL TGKQRRKNLS GAFSLEAHFS YQRIALIDDV VTTGTTAIEI
AELFEKRHIH VQIWCLARAE APGLMD