Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0177 |
Symbol | |
ID | 5614115 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 201710 |
End bp | 202510 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931003 |
Product | competence protein ComF |
Protein accession | YP_001471918 |
Protein GI | 157373318 |
COG category | [R] General function prediction only |
COG ID | [COG1040] Predicted amidophosphoribosyltransferases |
TIGRFAM ID | [TIGR00201] comF family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAAAAG ATTCTATAGC GCAGCGTGCA TTGACCGGTT TGGTTAAGGC TGCACAGTTC GGCAGAAGAC GATTACAGGC GCTCTATCGT GGAGTCGTTA ACCTGCTGGC TGCTAGTTTA CCGAATCGAT GTCTGATGTG CCATCAAAGC ATTGAGTTGC CTGATTCGGG GATCTGCTCC GTATGTCTAG TCACCGGTCT CTATCAAGTT CCCGTCTGCC TGGGCTGTGG TCGTGCCATG CAAGTCGAAG CCATCTACTG TGGCGCCTGT ACCTCGTCTC GACCCCTCAT GATTATTGCC CCCTGCAGCT ACCATCAAGG GTTGGGAGAG TGGGTCGGGC AGATGAAGTA CCAGACACAA TTTTCAGCAT TGCCGGTGTT ATCACATGTG TTAGCGAACC GGATTCTTTA CTTAGAGGAG ATTGGATTAC TGCAACTTCC TCAAGTATTA ATTCCGGTGC CCCTGCACAG TAACAGATTA AGGAAGAGGG GCTTTAATCA GGCATATCTG ATTGCGGATG CCCTTACCGG CAGGCTCAAT ATTCCGGTGG TAACCGAAGG GCTAACCCGG ACTATAGATA CGTGCTCTCA GGCTGGATTA ACGGGTAAGC AGCGGCGGAA AAATTTGTCA GGAGCCTTTA GCTTAGAGGC TCACTTCTCC TATCAGCGTA TCGCACTGAT CGATGATGTC GTGACCACAG GGACGACGGC AATAGAGATT GCGGAGCTTT TTGAGAAGCG ACATATTCAT GTGCAGATAT GGTGCCTCGC GAGGGCAGAA GCACCAGGGT TAATGGATTA G
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Protein sequence | MIKDSIAQRA LTGLVKAAQF GRRRLQALYR GVVNLLAASL PNRCLMCHQS IELPDSGICS VCLVTGLYQV PVCLGCGRAM QVEAIYCGAC TSSRPLMIIA PCSYHQGLGE WVGQMKYQTQ FSALPVLSHV LANRILYLEE IGLLQLPQVL IPVPLHSNRL RKRGFNQAYL IADALTGRLN IPVVTEGLTR TIDTCSQAGL TGKQRRKNLS GAFSLEAHFS YQRIALIDDV VTTGTTAIEI AELFEKRHIH VQIWCLARAE APGLMD
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