Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0160 |
Symbol | vmrA |
ID | 5613235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 182868 |
End bp | 184274 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640930986 |
Product | multidrug efflux pump VmrA |
Protein accession | YP_001471901 |
Protein GI | 157373301 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGCCA ACATCCAGGA TATAACCTCA GATCGCTCAA TACAGCGCAC CTTTTGGCGT TACGCTATCC CTTCGATAGC TGCCATGCTA GTGAGCGGGT TATACCAGAT CATCGACGGT ATGTTTATCG GACACTATCT GGGCTATCAG GGCCTGGCGG GCATCAATGT AGCCTGGCCC ATCATCTATG TGATTGCTGG TGTGGGCTTA ATGATTGGGA TGGGCGCTGG CAGCCTCATC TCAGGCAGTC GCGGAAGAAG CTCGACAAGC CAGCGAGGCC CAATAGAGGC TGGCAATGCT GATAAAGGAG TAGCAACAAT CCTATACACG GCTATGGGTT TGTCCATAGG CTTTGGAGCT ATTTTTTCAT ACCTGCTCTT TCTAAACGGC ACCGACCTTC TGCTTGCTCA GGGCGCAGAA GATCAAGCCT TAGTATTAGC ACAGCAGTAT ATCTCTCCTT TCGTCTGGAC CGCAGTGATC ACTATTCTTG CATCCGCCCT GCCCATGTTG GTTCGTAACG ATGAGAGTCC GAACATAGCG ACGGCTCTGA TGGTCACCGG AGCATGCATG AATATCGTAC TAGACTACCT GCTCATCGTT CAATTCGACA TGGGGCTGAA GGGAGCCGCG CTCGCAACCG TATCAGCGCA GCTGTCAGTT TGTGTTGGCG GCTTCGCCTA TTTTCTTTCG ACTAAAACTC AACTCAAGTT GTCCGAATAT CGTCCAAGTT TTCATACCAA GCTGGCCGGA AAGATTCTGC TGCTGGGATC ATCGAGTTTT GTTATGTATA TCTACACCAG CTTTGTCTTT GCGCTACATA ACCGTCTGTT TATGGAATAT GGCACCTCCT TAACCGTTGC GGCCTTTACC ATTGTCGGTT ATCTGATGGT TCTCTACTAC TTCATTGCAG AAGGCATTGG TGAAGGTATG CAACCTCCGG TCAGCTTCTT TTTAGGAGCG GCACAGCCCC ATAATATAAA GAAAATGGTG CTGTTGGCGG CAACGGTCTC ACTCACCATA GGCATTAGCT GGACCGCGAT ACTTAACCTG TTCCCCGAAA CCATGATTGG GTTATTTAAC AGCGACGATC CAGAGCTGAT ACGGGAAACC ATCACCGGCA TTCACCTACA TCTGTTTGGT ATGTTTCTCG ATGGGTTAGT GGTGTTAGCA ATCATGTATT TTATGGCAGT AGATCAAGGC GGGAAATCGT TAGCCATCTC TTTGGGCAAT ATGCTTATCC AGCTGCCTTT CCTCTACATA TTACCTAAAT GGCTGGGAAT ATATGGTGTA TGGATAGCAA TGCCACTCTC TAATGTGGTG ATGTTTATTA TCGTTGCCCC TATGGTGTGG CGTCACATGA ATGCGGCAAC CTCGCATAAG CAGATAGCAA GTCTGGCCAC TGCTTAA
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Protein sequence | MQANIQDITS DRSIQRTFWR YAIPSIAAML VSGLYQIIDG MFIGHYLGYQ GLAGINVAWP IIYVIAGVGL MIGMGAGSLI SGSRGRSSTS QRGPIEAGNA DKGVATILYT AMGLSIGFGA IFSYLLFLNG TDLLLAQGAE DQALVLAQQY ISPFVWTAVI TILASALPML VRNDESPNIA TALMVTGACM NIVLDYLLIV QFDMGLKGAA LATVSAQLSV CVGGFAYFLS TKTQLKLSEY RPSFHTKLAG KILLLGSSSF VMYIYTSFVF ALHNRLFMEY GTSLTVAAFT IVGYLMVLYY FIAEGIGEGM QPPVSFFLGA AQPHNIKKMV LLAATVSLTI GISWTAILNL FPETMIGLFN SDDPELIRET ITGIHLHLFG MFLDGLVVLA IMYFMAVDQG GKSLAISLGN MLIQLPFLYI LPKWLGIYGV WIAMPLSNVV MFIIVAPMVW RHMNAATSHK QIASLATA
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