Gene Ssed_0160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0160 
SymbolvmrA 
ID5613235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp182868 
End bp184274 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content49% 
IMG OID640930986 
Productmultidrug efflux pump VmrA 
Protein accessionYP_001471901 
Protein GI157373301 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCCA ACATCCAGGA TATAACCTCA GATCGCTCAA TACAGCGCAC CTTTTGGCGT 
TACGCTATCC CTTCGATAGC TGCCATGCTA GTGAGCGGGT TATACCAGAT CATCGACGGT
ATGTTTATCG GACACTATCT GGGCTATCAG GGCCTGGCGG GCATCAATGT AGCCTGGCCC
ATCATCTATG TGATTGCTGG TGTGGGCTTA ATGATTGGGA TGGGCGCTGG CAGCCTCATC
TCAGGCAGTC GCGGAAGAAG CTCGACAAGC CAGCGAGGCC CAATAGAGGC TGGCAATGCT
GATAAAGGAG TAGCAACAAT CCTATACACG GCTATGGGTT TGTCCATAGG CTTTGGAGCT
ATTTTTTCAT ACCTGCTCTT TCTAAACGGC ACCGACCTTC TGCTTGCTCA GGGCGCAGAA
GATCAAGCCT TAGTATTAGC ACAGCAGTAT ATCTCTCCTT TCGTCTGGAC CGCAGTGATC
ACTATTCTTG CATCCGCCCT GCCCATGTTG GTTCGTAACG ATGAGAGTCC GAACATAGCG
ACGGCTCTGA TGGTCACCGG AGCATGCATG AATATCGTAC TAGACTACCT GCTCATCGTT
CAATTCGACA TGGGGCTGAA GGGAGCCGCG CTCGCAACCG TATCAGCGCA GCTGTCAGTT
TGTGTTGGCG GCTTCGCCTA TTTTCTTTCG ACTAAAACTC AACTCAAGTT GTCCGAATAT
CGTCCAAGTT TTCATACCAA GCTGGCCGGA AAGATTCTGC TGCTGGGATC ATCGAGTTTT
GTTATGTATA TCTACACCAG CTTTGTCTTT GCGCTACATA ACCGTCTGTT TATGGAATAT
GGCACCTCCT TAACCGTTGC GGCCTTTACC ATTGTCGGTT ATCTGATGGT TCTCTACTAC
TTCATTGCAG AAGGCATTGG TGAAGGTATG CAACCTCCGG TCAGCTTCTT TTTAGGAGCG
GCACAGCCCC ATAATATAAA GAAAATGGTG CTGTTGGCGG CAACGGTCTC ACTCACCATA
GGCATTAGCT GGACCGCGAT ACTTAACCTG TTCCCCGAAA CCATGATTGG GTTATTTAAC
AGCGACGATC CAGAGCTGAT ACGGGAAACC ATCACCGGCA TTCACCTACA TCTGTTTGGT
ATGTTTCTCG ATGGGTTAGT GGTGTTAGCA ATCATGTATT TTATGGCAGT AGATCAAGGC
GGGAAATCGT TAGCCATCTC TTTGGGCAAT ATGCTTATCC AGCTGCCTTT CCTCTACATA
TTACCTAAAT GGCTGGGAAT ATATGGTGTA TGGATAGCAA TGCCACTCTC TAATGTGGTG
ATGTTTATTA TCGTTGCCCC TATGGTGTGG CGTCACATGA ATGCGGCAAC CTCGCATAAG
CAGATAGCAA GTCTGGCCAC TGCTTAA
 
Protein sequence
MQANIQDITS DRSIQRTFWR YAIPSIAAML VSGLYQIIDG MFIGHYLGYQ GLAGINVAWP 
IIYVIAGVGL MIGMGAGSLI SGSRGRSSTS QRGPIEAGNA DKGVATILYT AMGLSIGFGA
IFSYLLFLNG TDLLLAQGAE DQALVLAQQY ISPFVWTAVI TILASALPML VRNDESPNIA
TALMVTGACM NIVLDYLLIV QFDMGLKGAA LATVSAQLSV CVGGFAYFLS TKTQLKLSEY
RPSFHTKLAG KILLLGSSSF VMYIYTSFVF ALHNRLFMEY GTSLTVAAFT IVGYLMVLYY
FIAEGIGEGM QPPVSFFLGA AQPHNIKKMV LLAATVSLTI GISWTAILNL FPETMIGLFN
SDDPELIRET ITGIHLHLFG MFLDGLVVLA IMYFMAVDQG GKSLAISLGN MLIQLPFLYI
LPKWLGIYGV WIAMPLSNVV MFIIVAPMVW RHMNAATSHK QIASLATA