| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0156 |
|---|
| Symbol | |
|---|
| ID | 5613902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 177647 |
|---|
| End bp | 179263 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640930982 |
|---|
| Product | AbgT putative transporter |
|---|
| Protein accession | YP_001471897 |
|---|
| Protein GI | 157373297 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2978] Putative p-aminobenzoyl-glutamate transporter |
|---|
| TIGRFAM ID | [TIGR00819] p-Aminobenzoyl-glutamate transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.632237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTAA ATAAAGAAGA GGGCATAGAG CTGCCTCTCA ATTCACCGGG AGCATCAGGG
CCGCAGAGTG GTGCTTTTGT TCGTTTTCTT AATATTGTCG AACGATTAGG AAACTTACTT
CCCCACCCGA TATCCCTTTT CGCTATGTTC TGTCTGGCCG TTATCGCCAT CAGTGGCATC
GCCGGCTATT TTGAATTAAC CGTCGTAGAT CCCCGTCCGA TAGGCTCATC GGGTCGAAGT
GAAGATGGCC TTATCCATGT CGTGAGCCTA ATGAATGGCG AAGGTTTGAG GATGATAGTC
TCAAACCTGG TGACTAACTT CACCGGATTC ACTCCACTGG GCACTGTACT GGTTGCCCTG
CTGGGTGTCG GCATAGCCGA ACGTTCCGGC CTACTCTCGG CAGCGATGCG CTTACTGGTC
ATCGGAGCTT CAAAACGTCT GGTAACCCTC ACGATTGTAT TTGCCGGTAT TGTCTCTAAC
ACCGCATCCG AGCTGGGTTA TGTCGTCCTT GTGCCCATGG CGGCGATGAT ATTTCACTCT
CTCGGTCGTC ACCCCCTAGC GGGGCTTGCC GCCGCTTTTG CCGGGGTATC GGGCGGCTAC
AGTGCCAACC TGTTATTGGG CACGGTGGAT CCGCTTCTGT CCGGGATCAC CGAAGCCGCA
GCGCAGATGA TCGATCCCGA GTATATGGTA GGACCCGAGG TGAACTGGTA TTTCATGTTC
GTCTCTACCT TCCTTATCAC CATTCTGGGC GCTATCGTCA CCGAGAAAAT TGTCGAACCC
AAACTGGGGA AGTATGATCC TGATGAAGCT GCAGTCGATC TCGCCAGCCA AAAGATGGAT
GGTGTCAGCA GTGATGAGAA ACGCGGTCTA AAGGCTGCGG GGATCGCGGT ATTAATACTG
TCTTCACTGG TCGCACTGAC TGTCGTGCCT GAAAATGGTC CACTGAGAGA TCCTGAGACA
GGCTTAGTAG CAGGCTCCCC TTTCCTTAAA GGCATTGTCG CCTTTATCTT TATCTGCTTC
GCTATTCCGG GCTTGGTCTA CGGTAAGGTC GTGGGCACCA TGAAAAAAGA TAAAGATGTC
ATCGACGCCA TGTCGCACAG TATGAGTTCT ATGGGCATGT ATATCGTGCT GGTATTCTTC
GCTTCTCAGT TCGTCGCCTT CTTTAAGTGG ACTAACTTAG GTGCAGTGTT AGCCGTCTCC
GGGGCCGACG CCCTGAGCGC TATCGGCTTA ACGGGTCCAT TAGTGTTTGT GCTGTTTATC
ATGCTGTGTG GCTTCATCAA CCTGATGCTG GGTAGCGCCT CTGCGCAGTG GGCCGTGACC
GCCCCCATCT TCGTGCCTAT GTTGATGTTG GTAGGCTATG CACCGGAGAC GATTCAGGCG
GCTTATCGAA TAGGCGACTC GGTCACGAAC CTGATCACCC CCATGATGAG CTATTTTGGA
TTAATACTCG CGGTCGCTTC TCAATATAAG AAAAATCTCG GCATAGGCAC ACTGATCGCG
ACCATGCTGC CTTACTCCAT CGTCTTCTTC ATCGGCTGGA CCTGTTTCTT CTTCATCTGG
GTATTTGTGT TGGGGCTGCC GGTAGGGCCA GGGGCTGAGA CCTATTACAC CCCGTAA
|
|---|
| Protein sequence | MGLNKEEGIE LPLNSPGASG PQSGAFVRFL NIVERLGNLL PHPISLFAMF CLAVIAISGI
AGYFELTVVD PRPIGSSGRS EDGLIHVVSL MNGEGLRMIV SNLVTNFTGF TPLGTVLVAL
LGVGIAERSG LLSAAMRLLV IGASKRLVTL TIVFAGIVSN TASELGYVVL VPMAAMIFHS
LGRHPLAGLA AAFAGVSGGY SANLLLGTVD PLLSGITEAA AQMIDPEYMV GPEVNWYFMF
VSTFLITILG AIVTEKIVEP KLGKYDPDEA AVDLASQKMD GVSSDEKRGL KAAGIAVLIL
SSLVALTVVP ENGPLRDPET GLVAGSPFLK GIVAFIFICF AIPGLVYGKV VGTMKKDKDV
IDAMSHSMSS MGMYIVLVFF ASQFVAFFKW TNLGAVLAVS GADALSAIGL TGPLVFVLFI
MLCGFINLML GSASAQWAVT APIFVPMLML VGYAPETIQA AYRIGDSVTN LITPMMSYFG
LILAVASQYK KNLGIGTLIA TMLPYSIVFF IGWTCFFFIW VFVLGLPVGP GAETYYTP
|
|---|
| |