| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0152 |
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| Symbol | |
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| ID | 5611132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 171346 |
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| End bp | 172503 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640930978 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001471893 |
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| Protein GI | 157373293 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCAAA TAGTGAAAAT TGCCTCTGTT TTAAGTGTGG CGTTATGGAT AACAGCTTGT
GGACAAAAAC CTGAACAAGG GCCACAGGAA CGTGGGCCTA TGGAAGTAGG TGTTATAAAA
GTAGAGGCGC AGCCTCAATC AATTTTGGTT GAGTTGCCTG GTCGTAGTAA AGCTTATTTG
GAAGCGGAAG TTCGTCCTCA AGTCAGCGGT ATCATTATGA CTCGCGGCTT TGTAGAAGGG
AGAGATGTTG AAAAAGGTCA ATCCTTATAT CAGATCGATT CATCGACATA CACTGCAGCA
CTGATCAGTG CTAAAGCGGA TCTTCAAAGC GCAAAAGCCA ACTTAGTCTC CGCGAAAGCA
AAAGCATTAC GTTTTGAAAA ATTGGTCAAG CTTAACTCTA TAAGCGAGCA AGACTATGAT
GAAGCCGATG CCGCTTACAA AGCAGCATTA GCAAGAGTTA CAGTTGCTGA AGCGGCGATC
AATACTGCAA AGATTAATCT TGAGTACACC GAAGTTCGTG CACCTATTGC CGGGCGTGTG
GGCAAGTCTT CAGTGACAGC CGGTGCACTA GTTACTGCAA ATCAAACTCA AACATTAGCG
ACCATTCAGC AACTCGATCC CATTAATATC GAGATTGCGC AATCGAGTGC GCAAATGTTA
CGTCTGAAAT CTAAGTTAAA ACAGGGCCAA CTCAAGGCGG CTGATAACGC GGGTGTGCAG
CTCATTTTGG AAGACGGTAC AACATACAAG CACGATGGTG TGTTGCAGTT CGCTGAAGTG
AGTGTGAATG AGGACACGGG TTCCGTTATT TTGCGGGCTG AGTTTCCTAA CCCTGATGGC
GTGTTAATGC CTGGCATGTA TGTGCGTGCA GTGCTCAATA CCGGTACCGA TCCAGAAGCG
ATTTTAGTAC CCCAAAGAGC TATCACGCGT AATACCAAAG GTGAAGCCGT TGCCATGATT
ATCGATGCTG AAGGTAAGGT GGCTGCGCGA GTCGTCACGA CCGCTGAAGT GATCGATCAC
CAGTGGCGTA TTACTGATGG TTTAACTGTA GGTGATCAAC TGATTGTTGA AGGTCTGCAA
AAAATTCGCC CTGGCGCCGC CGTAAAAGCT GGACCGTTAG TGGCGGATAA GAAATCACAA
GCACAACAAC AGAAGTAG
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| Protein sequence | MRQIVKIASV LSVALWITAC GQKPEQGPQE RGPMEVGVIK VEAQPQSILV ELPGRSKAYL
EAEVRPQVSG IIMTRGFVEG RDVEKGQSLY QIDSSTYTAA LISAKADLQS AKANLVSAKA
KALRFEKLVK LNSISEQDYD EADAAYKAAL ARVTVAEAAI NTAKINLEYT EVRAPIAGRV
GKSSVTAGAL VTANQTQTLA TIQQLDPINI EIAQSSAQML RLKSKLKQGQ LKAADNAGVQ
LILEDGTTYK HDGVLQFAEV SVNEDTGSVI LRAEFPNPDG VLMPGMYVRA VLNTGTDPEA
ILVPQRAITR NTKGEAVAMI IDAEGKVAAR VVTTAEVIDH QWRITDGLTV GDQLIVEGLQ
KIRPGAAVKA GPLVADKKSQ AQQQK
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