| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0139 |
|---|
| Symbol | |
|---|
| ID | 5611678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 154595 |
|---|
| End bp | 157789 |
|---|
| Gene Length | 3195 bp |
|---|
| Protein Length | 1064 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640930965 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001471880 |
|---|
| Protein GI | 157373280 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTTTC GGCTTTTAAC TCAATGGCTT TCTCTCACAT CTATCGGCAG TAAAGTTATC
CTCTCTATGG CTGGGATCAG TCTTCTCGTG CTCATGCTAT CGGCATCAAA TTTCATCATG
AATACACGAG TGAAAGAGGA TACGACTGAG GTCAGTACAC ACGAGATCCC CAAAGCTATC
GCAGCAATTA ATATGCTAGA CGAAATAGGA GATATGAATT CCAACATCCT GGAGTACGTA
TTGGGAGAAG TTGATGAGAG AGATGATTTC GACCAGAACC AAATAACGTT TTTACAATAT
CTTGCCACCT TAAAAAGTGC CCTTAAAGCA CATGACCGCC GTATAGATGA GATCGAAGAG
TTGTTTAACG ACTTTCACAC CTCCGCGAGA GCTAACGTGT TTAACCGTTA TAACCCAAAT
AACGAAGCTT GGGCAAAGCA AAGAGTCGAT GGACTTACTA ACGTTACCGG CCATAAACTG
GAAGTGCTAT TAGATTCACT CAAGGAGAGT GAAATTAAAG ATGTCGGATC ACAACCCGAT
CTCAATGAGG TGATCCATGA TGATCTACCC GGCGTGCGCT ACTACTTAGA ATTAGTCGAT
GAAGCCGGAG ATATGACGGC GAATTTAACT GAGTATATTT CAGGCATATA TGAAGCCAAA
AACGCTTTCA TTGAGAACGC TCAAGATTTT GAGGAGTATT TGACTAAACT ACAACCCCTC
GAGCAAAAAC CCGAAGAGAT CGCCCTCTTG GCCGAGGTAG AAGCCCTGTA TAAAGTGCTT
AGAGATGGCG GCTTTGAAGT GTTTCAACGC TATAACTCAT CGAATAAGCT CGAAGCAATA
ACGGCTATCG ATGAGCTGGA ACATCAGACC TTCGCCCGAT TAGAGCGTTT ATTAGATGAT
GTATCCATAG ATGCTGAGAG AAATACCAAT CTGGAGCTAT TGGGGTTGAG GCAAATGACC
ATCTCAAATC AATATGTTCT TATCGTCTCA CTATTTCTGG TGCTGTCTCT TTGTATCAGT
ATTATCTATT TCTCCTACCG GATCATCACC CGTCCCATCA CTAAACTCAG TAGCACGATG
AAACAGCTTG CCGATGGCGA TACCGAAGTC GATGTCGTCT ATCGGGATCG ACAAGATGAA
GTCGGTAATA TGGCCCAGGC GGTGGAAGTG TTTAAAACTA ATATGATTGC CCGCAATGCC
GCAGAACAAG AGCTCGTCAT GGCAAAAGAT AATGCAGAGG CGGCATCCAA GGCAAAAGCT
AGCTTTCTTG CCACCATGTC ACATGAGATC AGAACTCCGA TGAACGGCAT CATAGGAATG
ATAGATCTGC TGCTCACATC GAGTCTGAAC CGAGATCAGC GCAGCATGAC CAATACCATT
CGCGACTCCT CTTTTTCACT GCTCAACATT ATTAACGATA TTCTGGACTT CTCTAAGATA
GAGGCTGGGA AATTAGAACT TGAAAGTCTC AACTTTTCCA TTAGCGAACT ACTCGAAAGT
GTCATCGACA CAATAACGCC CAACGCCGAT GAAAAAAGGG TAACTCTGGA ACTCTATACA
GACCCCAATA TTCCTCATCA TATCCAGGGT GATCCGGTGC GAATTAGACA GGTGTTATTT
AACTTAGTTG GAAATGCGGT TAAGTTTTCA GCCGTTCAGG ATAGCAGAGG AGAGGTTCGT
ATTACTCTCA AAAAAAAGGA ATTGAGCAAT CAACTCGTCT TCTTAACTAT TGAGATCCAA
GATAACGGCA TAGGCATTGA AGCCAAACAA CTGGAGAGAC TTTTCCAGCC ATTCACTCAG
GCCGAATCAT CTACAACAAG GCAATTCGGC GGTACGGGAC TGGGGCTCGC CATTTGCCAG
AACCTGGTTA ACTTGATGGG GGGTAAAATT GATGTCTCCA GCACTGTGGG TAAAGGCTCT
ATTTTCAAGG TAAACCTATC GTTTCCATAT ATAGAGCGGC CATCACCATT AACTCATGAT
TATCCAAAAG TTATAGTCAT CGATGATATT CATTCCGAAC CGCTATCGGT AAGAGTTAAG
GAGTACCTAA GTTCAAGAGA GGTCAACCTT GTCTCTATGC CTTATATGAA CACCTCTGAT
CACCTCAGAG ATAATGTAGA AACTTGGGCA CAAGTCGTCA TAGCCACCGA TCAGCTAGAA
CAATCCCGGC AACAAGTGGA GCAGAACCTT ACCGATGCAG AGCGTAAGAA CATACGCTTT
CTCGTACTAA AACCAACATC CAGGGGGGAT GGAATAATTG ATGATAATAC CTTCTCGATT
GCCGCATCAC CTCTAAAGAT AAGCACTCTC TTCTATGGTC TACATGTTGC CCTGGGTAGA
GAGAGTCCGT TAGACTCCTC CGCTCATGAA GCCGATACTC TATCACATAC TCCTCTGTCG
ATTACCGATG CCGAGAAAGC GGGACGCTTA ATCCTCGTCG CCGAAGACAA TCAGACTAAT
CAAGAGGTGA TTAAGCGCCA GCTGAGCAAA CTCGGTTACT CCTGTATCGT GGCTGACGAT
GGAGTTCATG CTGAGGAGCT TTACCCGACC TACAAATTCG CTATGGTATT AACCGATTGT
CATATGCCCA GAAGAGATGG TTACGAGCTG ACCAGAGTCC TCCGAAGTAT GCAAAAGAAG
AGTGGCATCA AGGTGCCGAT TATCGCGATC ACAGCCAATG CCCTGGTGGG CGAATCTGAG
AAGTGCATCG CAGCAGGAAT GGATGATTAC CTCTCTAAAC CTGTAGAACT GGTCAAACTC
AACAAGATGC TAAAAAAATG GCTATCCTCA TCTTTCAAAA ACAGCAATGA TGCAGATAAA
GAACAGACTG ACACTGAAAG ACGCTACTTA GACCAAGGTG TCATTAGCTT AGTCTTTGCC
GATGACAGGG AAGACTATAT CGCCGCATTG TCAGATTTTA TGGAGATCAT CCTGCCACAG
ATGAAGTCTA TGGTTAAGGA GCGCAATTTT AATATTAGCG CTATCGGAGA ATTAGCCCAT
AAACTCAAAT CGTCCGCTAA AACGATCGGC TTACTCTCAA TAGGCGATCA CTGTGAAACT
ATCGAAGCCA TCGCTAAAGA GCCTGATAAT CAACAGGCCA GAGTGAGCAT CACCGAACGA
CTCGACTCGA TAGAAGATCT GCTACCCCAG ATAGAGAAAG AGATCACAGA CGTGATCTCC
AGCGCCTGTC GCTAG
|
|---|
| Protein sequence | MPFRLLTQWL SLTSIGSKVI LSMAGISLLV LMLSASNFIM NTRVKEDTTE VSTHEIPKAI
AAINMLDEIG DMNSNILEYV LGEVDERDDF DQNQITFLQY LATLKSALKA HDRRIDEIEE
LFNDFHTSAR ANVFNRYNPN NEAWAKQRVD GLTNVTGHKL EVLLDSLKES EIKDVGSQPD
LNEVIHDDLP GVRYYLELVD EAGDMTANLT EYISGIYEAK NAFIENAQDF EEYLTKLQPL
EQKPEEIALL AEVEALYKVL RDGGFEVFQR YNSSNKLEAI TAIDELEHQT FARLERLLDD
VSIDAERNTN LELLGLRQMT ISNQYVLIVS LFLVLSLCIS IIYFSYRIIT RPITKLSSTM
KQLADGDTEV DVVYRDRQDE VGNMAQAVEV FKTNMIARNA AEQELVMAKD NAEAASKAKA
SFLATMSHEI RTPMNGIIGM IDLLLTSSLN RDQRSMTNTI RDSSFSLLNI INDILDFSKI
EAGKLELESL NFSISELLES VIDTITPNAD EKRVTLELYT DPNIPHHIQG DPVRIRQVLF
NLVGNAVKFS AVQDSRGEVR ITLKKKELSN QLVFLTIEIQ DNGIGIEAKQ LERLFQPFTQ
AESSTTRQFG GTGLGLAICQ NLVNLMGGKI DVSSTVGKGS IFKVNLSFPY IERPSPLTHD
YPKVIVIDDI HSEPLSVRVK EYLSSREVNL VSMPYMNTSD HLRDNVETWA QVVIATDQLE
QSRQQVEQNL TDAERKNIRF LVLKPTSRGD GIIDDNTFSI AASPLKISTL FYGLHVALGR
ESPLDSSAHE ADTLSHTPLS ITDAEKAGRL ILVAEDNQTN QEVIKRQLSK LGYSCIVADD
GVHAEELYPT YKFAMVLTDC HMPRRDGYEL TRVLRSMQKK SGIKVPIIAI TANALVGESE
KCIAAGMDDY LSKPVELVKL NKMLKKWLSS SFKNSNDADK EQTDTERRYL DQGVISLVFA
DDREDYIAAL SDFMEIILPQ MKSMVKERNF NISAIGELAH KLKSSAKTIG LLSIGDHCET
IEAIAKEPDN QQARVSITER LDSIEDLLPQ IEKEITDVIS SACR
|
|---|
| |