| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0117 |
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| Symbol | |
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| ID | 5612418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 130893 |
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| End bp | 131714 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640930943 |
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| Product | formamidopyrimidine-DNA glycosylase |
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| Protein accession | YP_001471858 |
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| Protein GI | 157373258 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
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| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00226258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATGC CTGAATTGCC CGAAGTAGAA GTTACCCGTC AGGGGATCAC TCCTCATTTA
GTCGATCAAC AAGCGACGGC ACTCACTGTG CGTAACGCCA GCCTTCGCTG GCCGGTACCG
GATATCGCAC AGCAGATCGT AGGGGAGACC ATTCGAAACG TGCGTCGTAG GGCGAAGTAC
CTGCTTATCG ATACCGATGC CGGCACGACA ATTGTGCATC TTGGCATGTC GGGAAGTCTG
AGAATCGTCT CCAGGAACAC GCCTGTCGAG AAGCATGATC ATATCGATTT AGAGCTGGCC
AGTGGCAAAA TACTGAGATT TAACGACCCA CGCCGCTTCG GTGCCTGGCT ATGGTGTGAA
CTGCCCGAAG AGGCGCATCC ACTGCTGTCA AAGCTCGGAC CTGAGCCGCT AAAAGACGGC
TTTAATCCCA CCTATCTTGA ACAGATATTA AAAAATAAGA AGAAAGCCAT TAAGCTCTGT
TTGATGGATA ACCATATTGT TGTGGGTGTC GGTAATATCT ATGCCAACGA AGCCCTGTTT
GCGGCAGGCA TTCATCCCGA AACGCAGGCG GGCAATGTCG ACACCGAGAG GTTGACGATT
CTGGTTACCG AGGTAAAACA GATCTTAGCG AACGCCATCA AGCAGGGAGG GACCACATTG
AAAGACTTCA CCAATGCCGA AGGAAAGCCT GGATACTTTG CCCAGAAGCT GCATGTTTAC
GGGCGAGGCG GTGAGACCTG CACCCAATGT GGCAATCTGC TCAGCGAGAT CAAGCTGGGC
CAGAGGGCCA CAGTATTTTG TGGCCTATGT CAGACTAAAT GA
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| Protein sequence | MNMPELPEVE VTRQGITPHL VDQQATALTV RNASLRWPVP DIAQQIVGET IRNVRRRAKY
LLIDTDAGTT IVHLGMSGSL RIVSRNTPVE KHDHIDLELA SGKILRFNDP RRFGAWLWCE
LPEEAHPLLS KLGPEPLKDG FNPTYLEQIL KNKKKAIKLC LMDNHIVVGV GNIYANEALF
AAGIHPETQA GNVDTERLTI LVTEVKQILA NAIKQGGTTL KDFTNAEGKP GYFAQKLHVY
GRGGETCTQC GNLLSEIKLG QRATVFCGLC QTK
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