| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0109 |
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| Symbol | |
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| ID | 5612856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 122793 |
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| End bp | 123821 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640930935 |
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| Product | glycosyl transferase family protein |
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| Protein accession | YP_001471850 |
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| Protein GI | 157373250 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTAA AACTTAATAA GATTAACTCC CTATGTCTGT TGCGTTTATC CGCCATCGGC
GATGTATGCC ATGCTGTGGC TATGGTGCAG GCGATACAGA GAAAATACCC GGCACTTAAG
ATAACCTGGG TGATAGGCAA GGTTGAGTAT CAATTGCTTA AGCATCTTGA GGGGGTTGAG
TTTGTTATTT TTGACAAGTC ACAGGGTTGG CGCAGCTATT TCAATTTAAG AAAGGCATTA
GCGGGGCAGA GGTTTGATGT GCTGCTACAT ATGCAAGTGG CCTTGAGAGC GACTATAGCC
TCACTGGCAA TATCTGCCAA GGTTCGAATC GGCTTCGATC GTTTCAGGGC TAAAGAGGGG
CAGTGGTTAG TGACAAATCA CAAGGTTGAG CCGCAAGAGA CGCCACATGT GCTTGAAGGC
TTTATGGGGT TCGCTAAGGC GCTTGGTGTT ACCGATCTCT CTCCGAAATG GAATATTCCG
GTTCCGTCAG CCGATACCGA GTTTGCCCAG AAGATGATCC CAGATGGCGA TAAAACCTTA
GTTATCTGTG CTGCGGCGAG TAAGGCTGAA CGTAACTGGT TACCAGAACG CTACGCCGCT
GTGGCTGAAC ATGCGATATC AAGAGGTTGT AGAGTAATGC TTTGTGGTGG GCCCGTACCC
TTGGAAATAG AGTTAGCAGA AGCTATCGAG CGAGCTTGTT CTCAGCCCCT TGAAAATCAA
GTCGGTAAGA CCTCGTTGAC TCAGCTGTTA GCTATCTTGA AGCAAGCCGC AATTGTATTG
GCCCCCGATA CCGGTCCAGC CCACATGGCA GTGACTCAAG GTACGCCAGT AATAGGGCTT
TATGCGCACT CAAATTCTGG AAGGACGGGG CCCTATTTTA GCTTAGATAC AGTTGTCAGC
GTCTACGATG AGGTTATCGC AGAGCAAGTC GATAGCCCCG TATGGGGAAC GCGAGCCAAG
GGCGAGCATT TAATGGCGAA GATTGAAGTG ACCCCAGTTA TCAGCCAACT AGATAAGTTA
CTCAGTTAA
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| Protein sequence | MSLKLNKINS LCLLRLSAIG DVCHAVAMVQ AIQRKYPALK ITWVIGKVEY QLLKHLEGVE
FVIFDKSQGW RSYFNLRKAL AGQRFDVLLH MQVALRATIA SLAISAKVRI GFDRFRAKEG
QWLVTNHKVE PQETPHVLEG FMGFAKALGV TDLSPKWNIP VPSADTEFAQ KMIPDGDKTL
VICAAASKAE RNWLPERYAA VAEHAISRGC RVMLCGGPVP LEIELAEAIE RACSQPLENQ
VGKTSLTQLL AILKQAAIVL APDTGPAHMA VTQGTPVIGL YAHSNSGRTG PYFSLDTVVS
VYDEVIAEQV DSPVWGTRAK GEHLMAKIEV TPVISQLDKL LS
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