| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0107 |
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| Symbol | |
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| ID | 5612687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 120940 |
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| End bp | 122043 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640930933 |
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| Product | dTDP-glucose 4,6-dehydratase |
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| Protein accession | YP_001471848 |
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| Protein GI | 157373248 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1088] dTDP-D-glucose 4,6-dehydratase |
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| TIGRFAM ID | [TIGR01181] dTDP-glucose 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTATGC ACAAAGATAA AACTGTTCTG GTAACGGGCG GCGCCGGGTT CATCGGCTCA
GCCCTGGTGA GATTTCTGAT TAACGAGACA TCTCACAGGG TTATCAACCT GGATAAATTA
ACCTATGCGG GTAACCTGGA GTCTTTAACC TCGATAGAGA GTAACGAGCG GTATCATTTC
ATTCTTGGGG ACATCTGCGA CCGCCCTTTG GTCGATGACA TCCTGAAGCG GTACCAACCC
GATATCATCA TGCACCTTGC CGCCGAGAGC CATGTCGATC GCTCTATCGA TGGGCCGGAT
GAGTTCATAC AAACCAATAT TCTTGGAACT TATACCCTGC TGGAAGCGAG TCGGAGTTAT
CTTGCTGAAC TTGAAGGCTG TAAGCAACAA GACTTCAGGT TTCACCATAT CTCAACCGAT
GAGGTCTATG GCGATTTGGG TGAAACCGGA CTCTTCACCG AGCAGAGCCC GTATAATCCA
AGCTCGCCCT ACTCGGCAAG TAAGGCTGCC TCGGACCATC TGGTCAGGGC CTGGTGTCGC
ACATTCCAAC TCCCCGTGGT GATCACCAAT TGTTCAAATA ACTATGGCCC CTTTCAATTT
CCTGAAAAGC TGATACCTCT GGTCATCCTT AACGCCTTGG AGGGGAAACC TCTGCCGGTT
TATGGCGATG GAAAACAGGT AAGAGACTGG TTATATGTCG ACGATCATGC TCGCGCCCTC
TACAAGGTAG CGACCGATGG CAAACCTGGC TCGACCTATA ATATCGGCGG CTATAACGAA
AAACAGAATA TTGACGTTAT CACCACCATC TGTGATCAGC TAAACAGCCT GATTGAAAGC
AAACCCTCAG GCATCGAGGA GTTCAATCAA CTGATCACTT ATGTCAAAGA CAGGCCGGGA
CACGATCTCC GTTATGCCAT CGATGCCACC AAAATCAAGA ATGAGTTGGG CTGGAAGCCT
GTGGAAACGT TCGAGTCCGG CATAGTAAAA ACCATCCAGT GGTATCTGGA CAACCTCGAG
TGGTGTCGCC ATATCCGGGA TGGCAGCTAT CGGAAGATTT CAGCCAATGA TAATAATCAA
ATGGATGAGA CTCCTAACGG ATGA
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| Protein sequence | MSMHKDKTVL VTGGAGFIGS ALVRFLINET SHRVINLDKL TYAGNLESLT SIESNERYHF
ILGDICDRPL VDDILKRYQP DIIMHLAAES HVDRSIDGPD EFIQTNILGT YTLLEASRSY
LAELEGCKQQ DFRFHHISTD EVYGDLGETG LFTEQSPYNP SSPYSASKAA SDHLVRAWCR
TFQLPVVITN CSNNYGPFQF PEKLIPLVIL NALEGKPLPV YGDGKQVRDW LYVDDHARAL
YKVATDGKPG STYNIGGYNE KQNIDVITTI CDQLNSLIES KPSGIEEFNQ LITYVKDRPG
HDLRYAIDAT KIKNELGWKP VETFESGIVK TIQWYLDNLE WCRHIRDGSY RKISANDNNQ
MDETPNG
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