| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0104 |
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| Symbol | |
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| ID | 5612956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 116896 |
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| End bp | 118164 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640930930 |
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| Product | 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein |
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| Protein accession | YP_001471845 |
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| Protein GI | 157373245 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1519] 3-deoxy-D-manno-octulosonic-acid transferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.499178 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGTT TTATTTATTC AATATTACTC TATCTACTTT TTCCTCTGTT GGTTATATAT
TTAGCCGTGC GTGCCATCAA GAGTCCCGAT TACCGTGGTA GGTGGGGGGA GAGGTTTGGC
CTTACATCCC TCAAGGGGAG CGACCTGCTT ATTCATTCAG TCTCTATGGG GGAGACTCTT
GCGGCCATTC CTCTGATTAA AGCGATCCAA CAAGCGCACC CTCAGCTTAG CATCACAGTG
ACTACGACGA GTCCAACCGG CTCTGCCGAG GTGACAAAAG CCTTCGGTGA CAGCGTTCAG
CACTGTTATC TGCCTTTCGA TCTGCCCTTT AGTGTTCGTC GGTTCCTGAA ACAGGTGGAT
CCGCAGTACT GCATCATTAT GGAGACCGAA CTGTGGCCAA ACTTGATCCA TCAGGCCTCT
CGCTGTGGAA TCAAGTTGAT GCTCGCCAAT GCGCGTTTAT CTGAAAAATC GGCCGGTAAA
TATCAAAAGC AGATAACCCT TTCTCAGCCT ATGTTGCAGA GTCTGGACTC GATAGCGGCT
CAGTCACAAC AAGCTGCAGA TCGTTTTATC GCACTAGGTG TGAACGCAGA CAGGGTTGAG
GTGTGTGGCA GCTTGAAGTT TGATCTTACC ATTGCCGATG ACAAGCGTGA GCAGGCCAAG
GCATTGCGCC AACAATGGCG CGCTGTAACC TGCCCGGTAT GGATTGCAGG CAGCGTTCAC
CCCGGTGAGT TCGATGCTAT CCTGGCTGCA CACAGACATC TGTTGACGAT ATACCCGGAT
GCCCTGCTTA TCATGGTGCC ACGTCATCCA GAGAAGTTTG ATGCGGCGGC GTCGAAGATA
TCTGAATCCG GGTTCACTCT CGCCAGACGT AGCTTAAAAG AGAGCGTCGA TGATGAGACT
CAGGTACTCC TGGGCGATAC CATGGGAGAG TTATTAACCT TCTATGGCGC GGCCGATCAG
GCATTTGTCG GTGGCACAAT AGTTGAAAAT GGCGGTCATA ATCCGCTAGA ACCTGCGGCG
CTGGGCCTGC CCGTATTTGT CGGACCACAT CATTGGGATT TCGCCGAGAT CACGGGCCTG
CTCAACGAGG CAGGAGCCCT GCAGCTGGTC TCGTCGGCCG AAGAGTTAGG CACAGCGTTA
GTGCGTAACT TTGAAGATAA GTCGGCATAT CAGGTAGCCA GCGAAGCTGG GTTAAGTGTT
GTTGACGCCA ACAAGGGGGC GTTACAGCAT CAGTTTGATC TTGCCAATCG GTTGATCGCC
TTCGAATGA
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| Protein sequence | MNRFIYSILL YLLFPLLVIY LAVRAIKSPD YRGRWGERFG LTSLKGSDLL IHSVSMGETL
AAIPLIKAIQ QAHPQLSITV TTTSPTGSAE VTKAFGDSVQ HCYLPFDLPF SVRRFLKQVD
PQYCIIMETE LWPNLIHQAS RCGIKLMLAN ARLSEKSAGK YQKQITLSQP MLQSLDSIAA
QSQQAADRFI ALGVNADRVE VCGSLKFDLT IADDKREQAK ALRQQWRAVT CPVWIAGSVH
PGEFDAILAA HRHLLTIYPD ALLIMVPRHP EKFDAAASKI SESGFTLARR SLKESVDDET
QVLLGDTMGE LLTFYGAADQ AFVGGTIVEN GGHNPLEPAA LGLPVFVGPH HWDFAEITGL
LNEAGALQLV SSAEELGTAL VRNFEDKSAY QVASEAGLSV VDANKGALQH QFDLANRLIA
FE
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